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1
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2
replies
640
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Can´t acces Biomart via R anymore
Biomart
updated 16 months ago by 14k • written 16 months ago by ▴ 80
7
votes
7
replies
2.8k
views
Mapping sequencing reads to 5-UTR, 3-UTR and CDS using Ensembl GTF files
RNA-Seq alignment sequencing genome
3.4 years ago by Beginner ▴ 80
8
votes
2
replies
3.3k
views
Is it okay to use a ENSEMBL toplevel genome for mapping when no primary assembly is available?
genome ensembl
4.7 years ago by Beginner ▴ 80
0
votes
2
replies
866
views
Why and how to discard mapped reads based on strandedness?
RNA-Seq Ribosome Profiling strandedness
updated 4.7 years ago by 14k • written 4.7 years ago by ▴ 80
1
vote
4
replies
900
views
Probably very simple question for gffread
gffread
updated 4.7 years ago by ★ 1.7k • written 4.7 years ago by ▴ 80
0
votes
3
replies
3.4k
views
rRNA and tRNA removal from mouse Ribosome profiling data - getting correct sequences
rRNA tRNA Ribosome profiling Ribo-seq
5.0 years ago by Beginner ▴ 80
3
votes
6
replies
6.9k
views
How to filter sequencing reads in a fastq file by size?
Ribo-Seq RNA-Seq fastq
updated 13 months ago by 43k • written 5.1 years ago by ▴ 80
1
vote
2
replies
1.1k
views
Install Perl module without always included "Foo" language (for Biopieces)
Perl Biopieces
updated 5.1 years ago by 43k • written 5.1 years ago by ▴ 80
2
votes
3
replies
3.4k
views
Can I simply rename a Illumina sequencing file (fastq format) that is named as .txt to .fastq without having any problems?
RNA-Seq sequencing
5.1 years ago by Beginner ▴ 80
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