Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
all
0
votes
1
reply
334
views
Comment:
Comment: Best genome browser for manual curation of gene structure(s)?
22 days ago by
William
★ 5.3k
5
votes
3
replies
334
views
Best genome browser for manual curation of gene structure(s)?
structure
gene
updated 22 days ago by
cmdcolin
★ 3.8k • written 23 days ago by
William
★ 5.3k
0
votes
0
replies
391
views
Comment:
Comment: What can cause broken read-pairs (chimeric read-pairs) in a sequencing run?
12 weeks ago by
William
★ 5.3k
0
votes
0
replies
391
views
Comment:
Comment: What can cause broken read-pairs (chimeric read-pairs) in a sequencing run?
12 weeks ago by
William
★ 5.3k
3
votes
4
replies
391
views
What can cause broken read-pairs (chimeric read-pairs) in a sequencing run?
QC
12 weeks ago by
William
★ 5.3k
0
votes
1
reply
431
views
Comment:
Comment: Difference between mRNA and transcript record types in GFF3 and GTF
3 months ago by
William
★ 5.3k
2
votes
3
replies
431
views
Difference between mRNA and transcript record types in GFF3 and GTF
gff3
updated 3 months ago by
i.sudbery
19k • written 3 months ago by
William
★ 5.3k
4
votes
7
replies
2.9k
views
6 follow
Insillico dual restriction enzyme reference genome digestion.
ddradseq
insillico
updated 6 months ago by
tshtatland
▴ 190 • written 7.8 years ago by
William
★ 5.3k
2
votes
2
replies
2.9k
views
Tools to create flanking sequences for variants based on a VCF file and reference genome.
vcf
assay
updated 7 months ago by
estpallag
▴ 10 • written 7.8 years ago by
William
★ 5.3k
4
votes
12
replies
4.1k
views
6 follow
Sort gff3 on chromosome, position and then featuretype (gene, mRNA, exon, CDS)
gff3
updated 7 months ago by
alejandrogzi
▴ 120 • written 4.0 years ago by
William
★ 5.3k
0
votes
0
replies
280
views
Find reference genome regions spanned by only mapping quality 0 reads in multiple WGS samples
mapping-quality
BAM
FASTA
8 months ago by
William
★ 5.3k
2
votes
1
reply
515
views
Gene prediction in the era of long read sequencing data and many reference genomes
gene-prediction
10 months ago by
William
★ 5.3k
1
vote
0
replies
515
views
Answer:
Answer: Gene prediction in the era of long read sequencing data and many reference genom
10 months ago by
William
★ 5.3k
1
vote
2
replies
4.2k
views
Comment:
Comment: Is there a file format better suited for the era of pangenomics than the .vcf? W
10 months ago by
William
★ 5.3k
1
vote
0
replies
673
views
Comment:
Comment: Reduce poly-N regions longer than 200bp back to 200bp in a reference genome FAST
13 months ago by
William
★ 5.3k
0
votes
1
reply
673
views
Comment:
Comment: Reduce poly-N regions longer than 200bp back to 200bp in a reference genome FAST
13 months ago by
William
★ 5.3k
3
votes
3
replies
673
views
Reduce poly-N regions longer than 200bp back to 200bp in a reference genome FASTA
FASTA
poly-N
13 months ago by
William
★ 5.3k
5
votes
2
replies
801
views
How to merge unique/non overlapping genes between 2 gene model GFF3 files?
gff3
updated 15 months ago by
Juke34
8.6k • written 15 months ago by
William
★ 5.3k
0
votes
1
reply
1.0k
views
Comment:
Comment: How to convert VCF (with possible predicted gene effects) to protein fasta/MSA
15 months ago by
William
★ 5.3k
1
vote
3
replies
1.0k
views
How to convert VCF (with possible predicted gene effects) to protein fasta/MSA
gff3
fasta
protein
VCF
updated 15 months ago by
Emily
23k • written 15 months ago by
William
★ 5.3k
0
votes
0
replies
804
views
Comment:
Comment: How to estimate and visualize haplotype blocks on a phased VCF/BCF
15 months ago by
William
★ 5.3k
1
vote
2
replies
804
views
How to estimate and visualize haplotype blocks on a phased VCF/BCF
haplotype
vcf
15 months ago by
William
★ 5.3k
0
votes
0
replies
1.1k
views
Comment:
Comment: how to calculate %of missing genotype in vcf file
19 months ago by
William
★ 5.3k
0
votes
1
reply
592
views
Tool that can merge 2 VCF files while taking "representational ambiguity" of (multi-allelic) variants into account
vcf
bcftools
updated 10 months ago by
Ram
43k • written 19 months ago by
William
★ 5.3k
0
votes
0
replies
372
views
How to call SVs between reference genomes and force those SVs to be genotyped in WGS samples?
SVs
21 months ago by
William
★ 5.3k
10
votes
5
replies
6.9k
views
How to determine percentage missing genotypes in VCF/BCF?
vcf
updated 23 months ago by
chrchang523
10k • written 6.8 years ago by
William
★ 5.3k
24
votes
6
replies
10k
views
8 follow
Add contig lenght to VCF header in a robust way
vcf
updated 24 months ago by
jena
▴ 290 • written 7.9 years ago by
William
★ 5.3k
6
votes
10
replies
2.7k
views
User friendly (visual&interactive) VCF/BCF mining tools (2021)
gui
vcf
updated 17 months ago by
jena
▴ 290 • written 2.6 years ago by
William
★ 5.3k
0
votes
2
replies
1.3k
views
Best (GATK compatible) RadSeq/GBS pipeline in 2021
radseq
gbs
gatk
updated 2.2 years ago by
rimgubaev
▴ 330 • written 3.2 years ago by
William
★ 5.3k
0
votes
1
reply
2.2k
views
How are features extracted and encoded from a genotype matrix / VCF file?
vcf
statistics
feature extraction
updated 2.2 years ago by
P
▴ 10 • written 7.8 years ago by
William
★ 5.3k
2
votes
1
reply
619
views
How does 23andme store and analyze SNP array data of 12M humans?
snparray
23andme
updated 2.2 years ago by
zx8754
11k • written 2.2 years ago by
William
★ 5.3k
9
votes
11
replies
3.4k
views
6 follow
Forum:
2021: state and usage of compressed file standards better than BAM and FASTQ
bam
compression
fastq
updated 22 months ago by
quentin54520
▴ 120 • written 3.0 years ago by
William
★ 5.3k
0
votes
0
replies
472
views
Calculate genome regions to exclude for Structural Variant calling
SV
2.4 years ago by
William
★ 5.3k
1
vote
0
replies
1.7k
views
Comment:
Comment: Is it possible to construct a full genome from whole sequence VCF files containi
2.6 years ago by
William
★ 5.3k
2
votes
1
reply
1.7k
views
Answer:
Answer: Is it possible to construct a full genome from whole sequence VCF files containi
2.6 years ago by
William
★ 5.3k
0
votes
0
replies
1.4k
views
Comment:
Comment: Merging VCF files.
2.6 years ago by
William
★ 5.3k
0
votes
1
reply
1.4k
views
Comment:
Comment: Strange speed up in GATK LeftAlignIndels
2.6 years ago by
William
★ 5.3k
0
votes
1
reply
1.4k
views
Answer:
Answer: Strange speed up in GATK LeftAlignIndels
2.6 years ago by
William
★ 5.3k
1
vote
1
reply
813
views
Filter criteria for variants based on GBS data
gbs
filter
updated 2.6 years ago by
Renesh
★ 2.2k • written 2.6 years ago by
William
★ 5.3k
1
vote
0
replies
4.2k
views
Answer:
Answer: How to merge many huge gVCFs with high speed.
2.6 years ago by
William
★ 5.3k
0
votes
0
replies
2.7k
views
Comment:
Comment: User friendly (visual&interactive) VCF/BCF mining tools (2021)
2.6 years ago by
William
★ 5.3k
0
votes
0
replies
2.7k
views
Comment:
Comment: User friendly (visual&interactive) VCF/BCF mining tools (2021)
2.6 years ago by
William
★ 5.3k
0
votes
1
reply
2.7k
views
Comment:
Comment: User friendly (visual&interactive) VCF/BCF mining tools (2021)
2.6 years ago by
William
★ 5.3k
0
votes
0
replies
3.5k
views
Comment:
Comment: How to set variant FILTER in a VCF file based on overlap with regions in a BED
2.7 years ago by
William
★ 5.3k
0
votes
0
replies
891
views
Comment:
Comment: Wobbly average GC profile spanning entire read length; what the cause and is it
2.8 years ago by
William
★ 5.3k
0
votes
2
replies
891
views
Wobbly average GC profile spanning entire R1 read length; what the cause and is it bad
fastq
qc
2.8 years ago by
William
★ 5.3k
0
votes
0
replies
1.3k
views
Comment:
Comment: Best pre and post alignment / variant calling QC tools for many WGS/RNA samples
2.9 years ago by
William
★ 5.3k
3
votes
3
replies
1.3k
views
Best pre and post alignment / variant calling QC tools for many WGS/RNA samples 2021
fastq
vcf
bam
2.9 years ago by
William
★ 5.3k
44
votes
21
replies
34k
views
16 follow
Multi-Sample Vcf To Phylogenetic Tree.
vcf
updated 15 months ago by
Ram
43k • written 10.6 years ago by
William
★ 5.3k
0
votes
1
reply
3.4k
views
Comment:
Comment: 2021: state and usuge of compressed file standards better than BAM and FASTQ
3.0 years ago by
William
★ 5.3k
385 results • Page
1 of 8
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6