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Comment: C: Consensus WGCNA: soft-threshold power selection
4.1 years ago by piyushjo ▴ 700
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1.4k
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Comment: C: GSEA analaysis understaning
4.1 years ago by piyushjo ▴ 700
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2
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4.4k
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Comment: C: How to understand the multi-sample processing of Seurat?
4.1 years ago by piyushjo ▴ 700
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1
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5.5k
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Answer: C: scRNA-seq, Seurat: correlation analysis of two replicates
4.1 years ago by piyushjo ▴ 700
2
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1
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1.4k
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Answer: C: GSEA analaysis understaning
4.1 years ago by piyushjo ▴ 700
7
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3
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1.8k
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Sequencing PHRED quality confusion
fastqc illumina 1.5 illumina 1.9
updated 4.1 years ago by 100k • written 4.1 years ago by ▴ 700
0
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3.4k
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Comment: C: HISAT2: an "IndexError: index out of range"
4.1 years ago by piyushjo ▴ 700
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1
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3.4k
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Comment: C: HISAT2: an "IndexError: index out of range"
4.1 years ago by piyushjo ▴ 700
0
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1
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3.4k
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Comment: C: HISAT2: an "IndexError: index out of range"
4.1 years ago by piyushjo ▴ 700
0
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0
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1.2k
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Comment: C: All sequenced reads in piared end sequencing don't have mate pairs?
4.2 years ago by piyushjo ▴ 700
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0
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1.2k
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Comment: C: All sequenced reads in piared end sequencing don't have mate pairs?
4.2 years ago by piyushjo ▴ 700
1
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5
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1.2k
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All sequenced reads in piared end sequencing don't have mate pairs?
HISAT2 paired end sequencing
updated 4.2 years ago by 35k • written 4.2 years ago by ▴ 700
0
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0
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1.2k
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Comment: C: All sequenced reads in piared end sequencing don't have mate pairs?
4.2 years ago by piyushjo ▴ 700
1
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0
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2.5k
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Comment: C: Does StringTie need strand information if HISAT2 was run with strand-specific in
4.2 years ago by piyushjo ▴ 700
1
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2
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2.5k
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Does StringTie need strand information if HISAT2 was run with strand-specific information
HISAT2 STRINGTIE
updated 4.2 years ago by ▴ 20 • written 4.8 years ago by ▴ 700
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2.4k
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Comment: C: Are liger or Seurat CCA good strategies for multiple scRNA-seq data integration?
4.3 years ago by piyushjo ▴ 700
4
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3
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2.4k
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Are liger or Seurat CCA good strategies for multiple scRNA-seq data integration?
scRNA-seq dataset integration
updated 5 months ago by ▴ 210 • written 4.3 years ago by ▴ 700
0
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0
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6.5k
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Comment: C: Single cell clutering after regressing out cell cycle effect using seurat
4.6 years ago by piyushjo ▴ 700
1
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0
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4.8k
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Comment: C: HISAT2 index building
4.6 years ago by piyushjo ▴ 700
2
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1
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1.3k
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Comment: C: lncRNA and circular RNA identification softwares
4.6 years ago by piyushjo ▴ 700
4
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6
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6.5k
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Single cell clutering after regressing out cell cycle effect using seurat
seurat scRNA-seq clustering
updated 6 months ago by ▴ 680 • written 4.7 years ago by ▴ 700
1
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0
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4.4k
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Comment: C: How to filter out the non-coding genes?
4.7 years ago by piyushjo ▴ 700
0
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0
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5.1k
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Comment: C: scRNA-seq analysis of two data-sets
4.7 years ago by piyushjo ▴ 700
0
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1
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5.1k
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Comment: C: scRNA-seq analysis of two data-sets
4.7 years ago by piyushjo ▴ 700
5
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7
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5.1k
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scRNA-seq analysis of two data-sets
seurat scRNA-seq
updated 4.7 years ago by ★ 16k • written 4.7 years ago by ▴ 700
0
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1
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6.5k
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Comment: C: Single cell clutering after regressing out cell cycle effect using seurat
4.7 years ago by piyushjo ▴ 700
0
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0
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1.1k
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Comment: C: Extracting important gene with similar expression level from multiple samples
4.7 years ago by piyushjo ▴ 700
0
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0
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2.9k
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Comment: C: GenBank accesion number to gene id
4.7 years ago by piyushjo ▴ 700
0
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1
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1.1k
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Answer: A: Extracting important gene with similar expression level from multiple samples
4.7 years ago by piyushjo ▴ 700
0
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1
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2.9k
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Comment: C: GenBank accesion number to gene id
4.7 years ago by piyushjo ▴ 700
0
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1
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2.9k
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Answer: A: GenBank accesion number to gene id
4.7 years ago by piyushjo ▴ 700
0
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0
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6.0k
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Answer: A: To generate an scRNA counts file using barcodes.tsv, genes.tsv and matrix.mtx fi
4.7 years ago by piyushjo ▴ 700
2
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0
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1.1k
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Answer: A: Upstream regulators of a gene/protein
4.7 years ago by piyushjo ▴ 700
3
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1
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3.3k
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Answer: A: Get a bunch of ENTREZID into gene symbols
4.7 years ago by piyushjo ▴ 700
0
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0
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1.3k
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Comment: C: Find similar values in two gene lists
4.7 years ago by piyushjo ▴ 700
0
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1
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1.3k
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Answer: A: Find similar values in two gene lists
4.7 years ago by piyushjo ▴ 700
0
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0
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1.3k
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Comment: C: Find similar values in two gene lists
4.7 years ago by piyushjo ▴ 700
0
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0
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3.5k
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Comment: C: Best way to address different batches of RNA-seq
4.7 years ago by piyushjo ▴ 700
1
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0
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4.1k
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Comment: C: what is inverse normalized RNA-seq expression and how to do that?
5.2 years ago by piyushjo ▴ 700
3
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3
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4.1k
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what is inverse normalized RNA-seq expression and how to do that?
normalization RNA-Seq
5.2 years ago by piyushjo ▴ 700
0
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0
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1.4k
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Answer: A: Get mRNA sequence from UCSC genome browser using coordinates
5.2 years ago by piyushjo ▴ 700
1
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0
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1.0k
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Answer: A: Differential Expression of lncRNAs in Brain --- Can a database aid my search?
5.3 years ago by piyushjo ▴ 700
0
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1
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2.4k
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Comment: C: Comparing stranded reads to unstranded reads
5.3 years ago by piyushjo ▴ 700
0
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1
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2.4k
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Comment: C: Comparing stranded reads to unstranded reads
5.3 years ago by piyushjo ▴ 700
2
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8
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2.4k
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Comparing stranded reads to unstranded reads
RNA-Seq DE gene strand information
updated 5.3 years ago by ▴ 120 • written 5.3 years ago by ▴ 700
0
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1
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2.4k
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Comment: C: Comparing stranded reads to unstranded reads
5.3 years ago by piyushjo ▴ 700
0
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0
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3.0k
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Comment: C: Tips for network prediction: WGCNA vs ARACNE (or MINET)
5.3 years ago by piyushjo ▴ 700
4
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2
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3.0k
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Tips for network prediction: WGCNA vs ARACNE (or MINET)
network inference aracne wgcna
updated 5.3 years ago by ▴ 20 • written 5.6 years ago by ▴ 700
0
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1
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2.3k
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Comment: C: RNA-strandness of single cell library prep methods
5.4 years ago by piyushjo ▴ 700
0
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9
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2.3k
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RNA-strandness of single cell library prep methods
scRNA-seq smarter-seq nextera fluidigm
updated 2.5 years ago by 43k • written 5.4 years ago by ▴ 700
147 results • Page 2 of 3
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