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questions
1
vote
3
replies
635
views
Can we use exon- counts to calculate coverage?
rna-seq
8 months ago by
unawaz
▴ 60
3
votes
1
reply
491
views
How to get transcript coverage from Salmon output?
salmon
RNAseq
RSeQC
transcriptome
updated 12 months ago by
Istvan Albert
100k • written 12 months ago by
unawaz
▴ 60
0
votes
1
reply
2.0k
views
Is it appropriate to apply RUVseq on output from kallisto?
RNA-Seq
batch-correction
kallisto
updated 17 days ago by
Ram
43k • written 5.3 years ago by
unawaz
▴ 60
11
votes
7
replies
3.9k
views
6 follow
What's your preferred pathway enrichment analysis tool after DEG analysis and why?
gene ontology
RNA-Seq
updated 5.3 years ago by
Jean-Karim Heriche
27k • written 5.3 years ago by
unawaz
▴ 60
8
votes
8
replies
6.0k
views
6 follow
Is there a way to get the name or IDs of genes with the goseq table?
RNA-Seq
gene ontology
goseq
updated 14 months ago by
MYX
• 0 • written 5.4 years ago by
unawaz
▴ 60
1
vote
2
replies
2.9k
views
How to make a gene expression correlation graph?
RNA-Seq
R
edgeR
updated 5.5 years ago by
h.mon
35k • written 5.5 years ago by
unawaz
▴ 60
3
votes
4
replies
2.1k
views
Advice on running a differential expression analysis on patients with slightly different mutations within each group
RNA-Seq
differential expression
edgeR
deseq2
5.6 years ago by
unawaz
▴ 60
10
votes
4
replies
2.1k
views
Low mapping percentage after mapping RNA-seq reads to a closely related species
RNA-Seq
alignment
genome
updated 5.9 years ago by
Friederike
8.9k • written 6.0 years ago by
unawaz
▴ 60
0
votes
0
replies
1.3k
views
How to retain transcripts from blastx output at a given coverage?
assembly
RNA-Seq
BLASTX
Trinity
6.2 years ago by
unawaz
▴ 60
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