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questions
1
vote
2
replies
1.1k
views
Visualization of fold changes of candidate genes as heatmap across multiple independent experiments
RNA-Seq
Visualization
HeatMap
Meta-analysis
3.5 years ago by
VBer
▴ 200
2
votes
10
replies
1.9k
views
Mann-Whitney Test/Wilcoxon but for individual genes between case and control
RNA-Seq
Statistics
3.6 years ago by
VBer
▴ 200
1
vote
1
reply
842
views
Methodology: Meta-analysis and integration of published transcriptomics and proteomics data
RNA-Seq
proteomics
omics
3.7 years ago by
VBer
▴ 200
0
votes
2
replies
3.0k
views
What is the importance of checking per base sequence content and per sequence GC content during Quality Control of NGS reads?
fastqc
next-gen
sequencing
updated 4.0 years ago by
Biostar
20 • written 5.0 years ago by
VBer
▴ 200
2
votes
1
reply
2.4k
views
Calculating genetic distance from VCF to MAP format
population genomics
updated 4.0 years ago by
chrchang523
10k • written 4.0 years ago by
VBer
▴ 200
4
votes
6
replies
1.1k
views
blastn of reference genome CDS to subject genome gives range of hits, which do not translate into protein
BLAST
4.1 years ago by
VBer
▴ 200
7
votes
9
replies
1.9k
views
Possible reasons mapping percentage abysmally low for miRNA reads?
miRNA
miRDeep2
4.3 years ago by
VBer
▴ 200
3
votes
3
replies
1.9k
views
NOISeq Fold Change calculation seems off?
RNA-Seq
updated 4.4 years ago by
Hyper_Odin
▴ 310 • written 4.8 years ago by
VBer
▴ 200
1
vote
3
replies
1.6k
views
Remove homozygous reference SNPS present in ALL samples of multi-sample VCF file
vcf
4.4 years ago by
VBer
▴ 200
1
vote
1
reply
2.2k
views
bcftools stats numbers do not match
bcftools
4.8 years ago by
VBer
▴ 200
1
vote
8
replies
6.4k
views
Error using feature counts with DESeq2 : Cannot create DESeqData object
RNA-Seq
DESeq2
featurecounts
updated 5.0 years ago by
Biostar
20 • written 5.0 years ago by
VBer
▴ 200
7
votes
4
replies
5.3k
views
bcftools mpileup --max depth : What would be a reasonable setting for this option?
bcftools
mpileup
consensus
5.0 years ago by
VBer
▴ 200
8
votes
2
replies
6.0k
views
Why do we need a .fai file and a .dict file of the reference during alignment and variant calling using GATK?
next-gen
sequencing
GATK
alignment
file_formats
updated 5.0 years ago by
Pierre Lindenbaum
161k • written 5.0 years ago by
VBer
▴ 200
3
votes
1
reply
2.3k
views
What is a Chimera with regards to NGS?
ngs
next-gen
sequencing
5.0 years ago by
VBer
▴ 200
0
votes
0
replies
1.2k
views
Error running Masurca in the background: how to rectify memory allocation error
Assembly
genome
5.1 years ago by
VBer
▴ 200
2
votes
2
replies
1.4k
views
Comparing transcriptomic data of the same species from different developmental stages
RNA-Seq
Comparative Transcriptomics
updated 6.3 years ago by
GouthamAtla
12k • written 6.3 years ago by
VBer
▴ 200
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