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904
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Determining heteroclonality of mutations in TCGA data
TCGA
4.7 years ago by
shawn.w.foley
★ 1.3k
1
vote
2
replies
1.9k
views
gcRMA normalize and run differential expression for signal intensity data without CEL files
microarray
limma
gcrma
illumina
updated 5.0 years ago by
Kevin Blighe
87k • written 5.0 years ago by
shawn.w.foley
★ 1.3k
3
votes
2
replies
5.1k
views
ChIP-seq differential binding with multiple replicates using MACS2 bdgdiff.
ChIP-Seq
MACS2
bdgdiff
updated 5.0 years ago by
ATpoint
82k • written 6.1 years ago by
shawn.w.foley
★ 1.3k
2
votes
1
reply
2.5k
views
Mutect2 "somatic" variants with resistant tissue culture lines
mutect2
wes
variants
genotyping
GATK
updated 5.0 years ago by
Biostar
20 • written 5.1 years ago by
shawn.w.foley
★ 1.3k
2
votes
7
replies
1.4k
views
How to identify translocation events within cell lines
translocation
whole genome seq
panel
updated 5.3 years ago by
Vitis
★ 2.5k • written 5.3 years ago by
shawn.w.foley
★ 1.3k
4
votes
3
replies
7.8k
views
How do you compare GSEA results between treatments?
GSEA
microarray
updated 6.1 years ago by
a_liberzon
• 0 • written 6.5 years ago by
shawn.w.foley
★ 1.3k
12
votes
6
replies
11k
views
Analyzing RNA-seq without replicates
RNA-seq
cufflinks
DESeq2
isoem2
isode2
updated 6.2 years ago by
i.sudbery
19k • written 6.2 years ago by
shawn.w.foley
★ 1.3k
1
vote
1
reply
1.8k
views
How do I extract normalized signal values for Affy SNP 6.0 chip using oligo or crlmm?
SNP
bioconductor
oligos
crlmm
6.4 years ago by
shawn.w.foley
★ 1.3k
3
votes
2
replies
1.5k
views
When performing Fisher's exact test, should I consider all annotated or all detected transcripts?
RNA-Seq
fisher's test
expression
statistics
updated 6.4 years ago by
Hussain Ather
▴ 990 • written 6.4 years ago by
shawn.w.foley
★ 1.3k
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