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Answer: Answer: Seurat changing order cluster shown in the violin plot
7 months ago by bk11 ★ 2.5k
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488
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Answer: Answer: Changing LFC font size on Complex Heatmap
7 months ago by bk11 ★ 2.5k
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0
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687
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Answer: Answer: pheatmap
7 months ago by bk11 ★ 2.5k
3
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1
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510
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Answer: Answer: Feature plot not applicable for RunTSNE object in seurat?
7 months ago by bk11 ★ 2.5k
3
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1
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828
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Answer: Answer: Exporting DEGs obtained from DESeq2
7 months ago by bk11 ★ 2.5k
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604
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Answer: Answer: GOSt Plot
7 months ago by bk11 ★ 2.5k
2
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1
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1.3k
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Answer: Answer: Help with error running velocyto
7 months ago by bk11 ★ 2.5k
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1
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1.1k
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Answer: Answer: Search RCSB with a list of protein names?
7 months ago by bk11 ★ 2.5k
2
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0
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549
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Answer: Answer: Imputation server failing to see samples in VCF files
7 months ago by bk11 ★ 2.5k
3
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1
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1.4k
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Answer: Answer: How to convert data in r?
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
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1.9k
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Answer: Answer: Converting hdf5 file to loom file
7 months ago by bk11 ★ 2.5k
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2.0k
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Answer: Answer: How to plot proportion of cells in each cluster with scanpy?
7 months ago by bk11 ★ 2.5k
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960
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Answer: Answer: Violin plot (Monocle 3) - Troubleshooting
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
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531
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Answer: Answer: miRDeep2 - identifying miRNAs from deep sequencing data
7 months ago by bk11 ★ 2.5k
1
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1
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955
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Answer: Answer: How to display all top markers in the heatmap by DoHeatmap (Seurat) when there a
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
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1.5k
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Answer: Answer: Inflated GWAS test statistic after merging multiple batches of genotype dataset
8 months ago by bk11 ★ 2.5k
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0
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1.1k
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Answer: Answer: differential gene expression analysis comparing different conditions using scRNA
8 months ago by bk11 ★ 2.5k
3
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417
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Answer: Answer: Automatic Cluster Annotation to the subsets of immune cells
8 months ago by bk11 ★ 2.5k
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1
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740
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Answer: Answer: Data Import Issue detectRUNS R
8 months ago by bk11 ★ 2.5k
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1
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804
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Answer: Answer: GTF annotation file for Hg38 Dec 2013 (First Release)
8 months ago by bk11 ★ 2.5k
2
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1
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462
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Answer: Answer: How to split grouping information in a single expression matrix?
8 months ago by bk11 ★ 2.5k
0
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1
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836
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Answer: Answer: Running Enrichr in python using a background gene list
8 months ago by bk11 ★ 2.5k
2
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0
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3.4k
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Answer: Answer: Running python script in slurm using conda environment
8 months ago by bk11 ★ 2.5k
2
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0
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533
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Answer: Answer: how to remove description from header?
8 months ago by bk11 ★ 2.5k
1
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0
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888
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Answer: Answer: summarize consecutive columns over a data frame
updated 7 months ago by 43k • written 8 months ago by ★ 2.5k
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0
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500
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Answer: Answer: Choosing background for ORA using scrnaseq
8 months ago by bk11 ★ 2.5k
0
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1
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638
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Answer: Answer: Michigan Imputation Server low reference overlap
8 months ago by bk11 ★ 2.5k
0
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1
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1.2k
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Answer: Answer: Is there a way to get a list of all homogygous sites for each sample with plink
8 months ago by bk11 ★ 2.5k
2
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0
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631
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Answer: Answer: Consensus Cluster takes normalized gene counts or raw gene counts?
8 months ago by bk11 ★ 2.5k
3
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0
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1.0k
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Answer: Answer: Could not view/find meta.data and Error merging three seurat object
8 months ago by bk11 ★ 2.5k
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0
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1.9k
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Answer: Answer: How to limit fasta header to 40 characters?
8 months ago by bk11 ★ 2.5k
0
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0
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685
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Answer: Answer: GO annotation in R using library(org.Hs.eg.db)
8 months ago by bk11 ★ 2.5k
2
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1
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1.9k
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Answer: Answer: How to limit fasta header to 40 characters?
8 months ago by bk11 ★ 2.5k
2
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0
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627
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Answer: Answer: About scdbfinder
8 months ago by bk11 ★ 2.5k
4
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1
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679
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Answer: Answer: How to calculate GC content of reads that mapped to a specific gene?
8 months ago by bk11 ★ 2.5k
1
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1
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1.2k
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Answer: Answer: R based query about making pairwise matrix
8 months ago by bk11 ★ 2.5k
2
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2
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1.6k
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Answer: Answer: Help with Error: Required version of NumPy not available: installation of Numpy
8 months ago by bk11 ★ 2.5k
0
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1
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1.3k
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Answer: Answer: CellRanger output more cells than specified using --force-cells? Why?
8 months ago by bk11 ★ 2.5k
0
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1
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1.6k
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Answer: Answer: Negative Expression in RNA Assay on Dot Plot After SCT Transform
8 months ago by bk11 ★ 2.5k
0
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0
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435
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Answer: Answer: Checking a SNP as common SNP or not using UCSC genome browser
8 months ago by bk11 ★ 2.5k
1
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0
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336
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Answer: Answer: tfea.chip mouse server
8 months ago by bk11 ★ 2.5k
2
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1
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890
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Answer: Answer: Integration in single cell RNAseq: What does it mean?
8 months ago by bk11 ★ 2.5k
0
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1
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936
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Answer: Answer: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
8 months ago by bk11 ★ 2.5k
2
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1
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676
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Answer: Answer: Help with error using ClosetFeature() in Signac
8 months ago by bk11 ★ 2.5k
1
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1
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555
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Answer: Answer: Non-coding DNA structure prediction recomendation
8 months ago by bk11 ★ 2.5k
1
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1
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1.0k
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Answer: Answer: How to construct an adjacency matrix based on output of nearest neighbors sear
8 months ago by bk11 ★ 2.5k
0
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0
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765
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Answer: Answer: How to Add Mutations to the sequence
8 months ago by bk11 ★ 2.5k
0
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0
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1.2k
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Answer: Answer: Identifying transcription factors for a list of genes
updated 7 months ago by 43k • written 8 months ago by ★ 2.5k
1
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1
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583
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Answer: Answer: Trouble with breseq Bam2Cov
8 months ago by bk11 ★ 2.5k
0
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1
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874
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Answer: Answer: A cluster expresses two types of cells' markers in scRNA-seq
8 months ago by bk11 ★ 2.5k
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