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Answer: Answer: 1000 genome project specific genes selection
3 months ago by bk11 ★ 2.4k
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539
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Answer: Answer: reading scRNAseq .h5 file into anndata format from GEO - No clear matrix?
3 months ago by bk11 ★ 2.4k
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296
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Comment: Comment: X chromosome inactivation
3 months ago by bk11 ★ 2.4k
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294
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Answer: Answer: GWAS on unbalanced case-control UKB dataset using PLINK2
3 months ago by bk11 ★ 2.4k
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465
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Comment: Comment: Need suggestions for ROC Curve in R
3 months ago by bk11 ★ 2.4k
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266
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Comment: Comment: CellPlex CMO highbackground
3 months ago by bk11 ★ 2.4k
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1
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509
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Comment: Comment: Extract bfile from .bgen using a given .bim to handle duplicated snps
3 months ago by bk11 ★ 2.4k
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1
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509
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Comment: Comment: Extract bfile from .bgen using a given .bim to handle duplicated snps
3 months ago by bk11 ★ 2.4k
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1
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385
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Comment: Comment: How to choose --hwe threshold?
3 months ago by bk11 ★ 2.4k
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0
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459
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Comment: Comment: Merge seurat list
3 months ago by bk11 ★ 2.4k
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402
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Comment: Comment: GO enrichment plot with dotplot strange axis
3 months ago by bk11 ★ 2.4k
1
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1
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459
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Answer: Answer: Merge seurat list
3 months ago by bk11 ★ 2.4k
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1
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402
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Comment: Comment: GO enrichment plot with dotplot strange axis
3 months ago by bk11 ★ 2.4k
2
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1
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541
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Answer: Answer: Splitting scRNA seq data from Multiome data(scRNA+ scATAC)
updated 3 months ago by 43k • written 3 months ago by ★ 2.4k
1
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1
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1.5k
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Answer: Answer: Issues with Merging Seurat Objects: Multiple Counts in Assays Layer
3 months ago by bk11 ★ 2.4k
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1
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506
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Comment: Comment: How to find SNP locations in assemblies other than hg38
3 months ago by bk11 ★ 2.4k
1
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0
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327
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Answer: Answer: Extract information of mapped reads bam files
3 months ago by bk11 ★ 2.4k
2
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1
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1.1k
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Comment: Comment: Shrink logFC values after edgeR
3 months ago by bk11 ★ 2.4k
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263
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Comment: Comment: Is it possible to identify the strand of an RNA using UMI?
3 months ago by bk11 ★ 2.4k
0
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1
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566
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Comment: Comment: Does salmon work with combined short and long read bam file?
3 months ago by bk11 ★ 2.4k
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1
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536
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Comment: Comment: allele matching between identical genotypes
3 months ago by bk11 ★ 2.4k
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0
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243
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Comment: Comment: EnhancedVolcanop plot using GSE data
3 months ago by bk11 ★ 2.4k
1
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1
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496
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Comment: Comment: 1000G Reference Panel Hg38 Michigan Imputation Server
3 months ago by bk11 ★ 2.4k
2
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1
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620
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Comment: Comment: PCA plot interpretation (single population)
3 months ago by bk11 ★ 2.4k
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0
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290
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Answer: Answer: Obtain rsID GWAS variants (9M)
3 months ago by bk11 ★ 2.4k
2
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0
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305
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Answer: Answer: Data scaling in single-cell RNAseq - sample-wise or on the full set?
3 months ago by bk11 ★ 2.4k
0
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1
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395
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Comment: Comment: GEO Affymetrix data for differential expression analysis?
4 months ago by bk11 ★ 2.4k
1
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0
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462
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Comment: Comment: Transcript Based Annotation of Variants Using Annovar
4 months ago by bk11 ★ 2.4k
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1
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434
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Comment: Comment: Freyja tool help
4 months ago by bk11 ★ 2.4k
1
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0
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323
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Answer: Answer: filter 1000 genome vcf file to keep common snps
4 months ago by bk11 ★ 2.4k
0
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0
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689
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Answer: Answer: Liftover - Picard and plink issues when performing liftover from CanFam4 to CanF
4 months ago by bk11 ★ 2.4k
1
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0
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267
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Comment: Comment: Extract Domain Architectures from Pfam / Interpro
4 months ago by bk11 ★ 2.4k
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0
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306
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Comment: Comment: Compute ld and genomic distance using clump function in plink
4 months ago by bk11 ★ 2.4k
1
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1
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1.1k
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Comment: Comment: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
4 months ago by bk11 ★ 2.4k
1
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1
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1.1k
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Answer: Answer: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
4 months ago by bk11 ★ 2.4k
0
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0
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498
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Comment: Comment: sample data for plant RNA seq analysis
4 months ago by bk11 ★ 2.4k
1
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0
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383
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Comment: Comment: RNA-Seq and ATAC-Seq quality check
4 months ago by bk11 ★ 2.4k
0
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0
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746
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Comment: Comment: There are several lines in Manhattan plot.
4 months ago by bk11 ★ 2.4k
2
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0
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349
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Answer: Answer: OSCA -open .h5 file
4 months ago by bk11 ★ 2.4k
0
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0
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313
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Comment: Comment: Trimming reads before running Juicer
4 months ago by bk11 ★ 2.4k
1
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0
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338
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Comment: Comment: Metabolomics Data Analysis
4 months ago by bk11 ★ 2.4k
0
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1
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746
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Answer: Answer: There are several lines in Manhattan plot.
4 months ago by bk11 ★ 2.4k
0
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1
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450
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Answer: Answer: tool to find enhancer associated to gene list
5 months ago by bk11 ★ 2.4k
1
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1
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624
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Answer: Answer: How to compute Hudson's/Bhatia's FST in R OR with vcf?
5 months ago by bk11 ★ 2.4k
0
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1
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449
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Comment: Comment: Seeking Individual-Level Genotype Data for Linkage Disequilibrium Analysis Beyon
5 months ago by bk11 ★ 2.4k
1
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0
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661
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Answer: Answer: Convert bed file from hg19 to GRCH38
5 months ago by bk11 ★ 2.4k
0
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0
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418
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Comment: Comment: select unique samples in R
5 months ago by bk11 ★ 2.4k
0
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13
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1.6k
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Generating count matrix from Chromium Fixed RNA Profiling (FRP) data outside Cell Ranger.
fixed-RNA-profiling chromium cellranger scFFPE
updated 5 months ago by ▴ 70 • written 6 months ago by ★ 2.4k
0
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0
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2.6k
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Comment: Comment: Cellcyclescoring did not work in Seurat V5
5 months ago by bk11 ★ 2.4k
2
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2
replies
599
views
Answer: Answer: Alternatives to snpflip to find ambigious and flipped snps
6 months ago by bk11 ★ 2.4k
402 results • Page 2 of 9
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