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Comment: Comment: GO enrichment plot with dotplot strange axis
12 weeks ago by bk11 ★ 2.4k
2
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1
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509
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Answer: Answer: Splitting scRNA seq data from Multiome data(scRNA+ scATAC)
updated 11 weeks ago by 43k • written 12 weeks ago by ★ 2.4k
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1.3k
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Answer: Answer: Issues with Merging Seurat Objects: Multiple Counts in Assays Layer
12 weeks ago by bk11 ★ 2.4k
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490
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Comment: Comment: How to find SNP locations in assemblies other than hg38
12 weeks ago by bk11 ★ 2.4k
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313
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Answer: Answer: Extract information of mapped reads bam files
12 weeks ago by bk11 ★ 2.4k
2
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1
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1.0k
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Comment: Comment: Shrink logFC values after edgeR
3 months ago by bk11 ★ 2.4k
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251
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Comment: Comment: Is it possible to identify the strand of an RNA using UMI?
3 months ago by bk11 ★ 2.4k
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1
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543
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Comment: Comment: Does salmon work with combined short and long read bam file?
3 months ago by bk11 ★ 2.4k
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1
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516
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Comment: Comment: allele matching between identical genotypes
3 months ago by bk11 ★ 2.4k
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232
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Comment: Comment: EnhancedVolcanop plot using GSE data
3 months ago by bk11 ★ 2.4k
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1
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447
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Comment: Comment: 1000G Reference Panel Hg38 Michigan Imputation Server
3 months ago by bk11 ★ 2.4k
2
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1
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603
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Comment: Comment: PCA plot interpretation (single population)
3 months ago by bk11 ★ 2.4k
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265
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Answer: Answer: Obtain rsID GWAS variants (9M)
3 months ago by bk11 ★ 2.4k
2
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0
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284
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Answer: Answer: Data scaling in single-cell RNAseq - sample-wise or on the full set?
3 months ago by bk11 ★ 2.4k
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1
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369
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Comment: Comment: GEO Affymetrix data for differential expression analysis?
3 months ago by bk11 ★ 2.4k
1
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0
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441
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Comment: Comment: Transcript Based Annotation of Variants Using Annovar
3 months ago by bk11 ★ 2.4k
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1
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398
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Comment: Comment: Freyja tool help
3 months ago by bk11 ★ 2.4k
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0
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313
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Answer: Answer: filter 1000 genome vcf file to keep common snps
3 months ago by bk11 ★ 2.4k
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0
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647
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Answer: Answer: Liftover - Picard and plink issues when performing liftover from CanFam4 to CanF
3 months ago by bk11 ★ 2.4k
1
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0
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239
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Comment: Comment: Extract Domain Architectures from Pfam / Interpro
3 months ago by bk11 ★ 2.4k
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0
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286
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Comment: Comment: Compute ld and genomic distance using clump function in plink
3 months ago by bk11 ★ 2.4k
1
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1
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1.0k
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Comment: Comment: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
4 months ago by bk11 ★ 2.4k
1
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1
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1.0k
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Answer: Answer: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
4 months ago by bk11 ★ 2.4k
0
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0
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484
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Comment: Comment: sample data for plant RNA seq analysis
4 months ago by bk11 ★ 2.4k
1
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0
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376
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Comment: Comment: RNA-Seq and ATAC-Seq quality check
4 months ago by bk11 ★ 2.4k
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0
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721
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Comment: Comment: There are several lines in Manhattan plot.
4 months ago by bk11 ★ 2.4k
2
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0
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323
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Answer: Answer: OSCA -open .h5 file
4 months ago by bk11 ★ 2.4k
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0
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517
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Comment: Comment: Help with PRS score
4 months ago by bk11 ★ 2.4k
0
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1
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517
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Comment: Comment: Help with PRS score
4 months ago by bk11 ★ 2.4k
0
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1
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517
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Comment: Comment: Help with PRS score
4 months ago by bk11 ★ 2.4k
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0
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300
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Comment: Comment: Trimming reads before running Juicer
4 months ago by bk11 ★ 2.4k
1
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0
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331
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Comment: Comment: Metabolomics Data Analysis
4 months ago by bk11 ★ 2.4k
0
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1
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721
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Answer: Answer: There are several lines in Manhattan plot.
4 months ago by bk11 ★ 2.4k
0
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1
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438
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Answer: Answer: tool to find enhancer associated to gene list
4 months ago by bk11 ★ 2.4k
1
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1
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595
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Answer: Answer: How to compute Hudson's/Bhatia's FST in R OR with vcf?
4 months ago by bk11 ★ 2.4k
0
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1
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436
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Comment: Comment: Seeking Individual-Level Genotype Data for Linkage Disequilibrium Analysis Beyon
4 months ago by bk11 ★ 2.4k
1
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0
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614
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Answer: Answer: Convert bed file from hg19 to GRCH38
4 months ago by bk11 ★ 2.4k
0
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0
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401
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Comment: Comment: select unique samples in R
4 months ago by bk11 ★ 2.4k
0
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13
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1.6k
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Generating count matrix from Chromium Fixed RNA Profiling (FRP) data outside Cell Ranger.
fixed-RNA-profiling chromium cellranger scFFPE
updated 5 months ago by ▴ 70 • written 6 months ago by ★ 2.4k
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2.4k
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Comment: Comment: Cellcyclescoring did not work in Seurat V5
5 months ago by bk11 ★ 2.4k
2
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2
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580
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Answer: Answer: Alternatives to snpflip to find ambigious and flipped snps
5 months ago by bk11 ★ 2.4k
1
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1
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449
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Comment: Comment: Quality control on imputed genotypes for GWAS / application of PGS
5 months ago by bk11 ★ 2.4k
2
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0
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1.6k
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Answer: Answer: keep getting error while trying to convert Seurat object into a H5ad file
5 months ago by bk11 ★ 2.4k
0
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1
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968
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Comment: Comment: scRNA-seq quality control
5 months ago by bk11 ★ 2.4k
1
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1
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888
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Comment: Comment: duplicates issues when trying to convert long to wide in R
5 months ago by bk11 ★ 2.4k
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0
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507
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Answer: Answer: Perform PCA
5 months ago by bk11 ★ 2.4k
1
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1
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888
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Answer: Answer: duplicates issues when trying to convert long to wide in R
5 months ago by bk11 ★ 2.4k
1
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1
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471
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Comment: Comment: A question about the missing or not observed alleles in PLINK datasets
5 months ago by bk11 ★ 2.4k
0
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0
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388
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Answer: Answer: Should I apply doublet detection for each pool seperately?
5 months ago by bk11 ★ 2.4k
0
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0
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642
views
Comment: Comment: convert matrix files from 10X (single cell) to h5 file
5 months ago by bk11 ★ 2.4k
393 results • Page 2 of 8
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