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3
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0
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235
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Answer: Answer: Seurat merge and batch correction
updated 8 days ago by 43k • written 8 days ago by ★ 2.4k
2
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1
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266
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Answer: Answer: How to filter columns in a raw sparse matrix in R
15 days ago by bk11 ★ 2.4k
1
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1
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461
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Answer: Answer: Rename multiple fastq.gz files
15 days ago by bk11 ★ 2.4k
0
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0
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210
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Answer: Answer: convert h5ad to rds
21 days ago by bk11 ★ 2.4k
0
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0
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213
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Answer: Answer: RNA-seq with normalized cpm count
5 weeks ago by bk11 ★ 2.4k
0
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1
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472
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Answer: Answer: 'Invalid parameter' error to generate a count matrix using featurecounts
6 weeks ago by bk11 ★ 2.4k
1
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1
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297
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Answer: Answer: Seurat: CreateSeuratObject error, please help
7 weeks ago by bk11 ★ 2.4k
3
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0
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523
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Answer: Answer: SHAPEIT5 phasing
7 weeks ago by bk11 ★ 2.4k
0
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1
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351
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Answer: Answer: Converting SNP data table into .traw format or qtl (R) format
10 weeks ago by bk11 ★ 2.4k
3
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1
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797
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Answer: Answer: ensembl - selecting SNPs of specific genes
11 weeks ago by bk11 ★ 2.4k
1
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0
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252
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Answer: Answer: 1000 genome project specific genes selection
11 weeks ago by bk11 ★ 2.4k
0
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0
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497
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Answer: Answer: reading scRNAseq .h5 file into anndata format from GEO - No clear matrix?
11 weeks ago by bk11 ★ 2.4k
0
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0
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281
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Answer: Answer: GWAS on unbalanced case-control UKB dataset using PLINK2
11 weeks ago by bk11 ★ 2.4k
1
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1
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437
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Answer: Answer: Merge seurat list
12 weeks ago by bk11 ★ 2.4k
2
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1
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510
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Answer: Answer: Splitting scRNA seq data from Multiome data(scRNA+ scATAC)
updated 11 weeks ago by 43k • written 12 weeks ago by ★ 2.4k
1
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1
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1.3k
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Answer: Answer: Issues with Merging Seurat Objects: Multiple Counts in Assays Layer
12 weeks ago by bk11 ★ 2.4k
1
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0
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316
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Answer: Answer: Extract information of mapped reads bam files
12 weeks ago by bk11 ★ 2.4k
0
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0
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267
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Answer: Answer: Obtain rsID GWAS variants (9M)
3 months ago by bk11 ★ 2.4k
2
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0
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285
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Answer: Answer: Data scaling in single-cell RNAseq - sample-wise or on the full set?
3 months ago by bk11 ★ 2.4k
1
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0
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313
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Answer: Answer: filter 1000 genome vcf file to keep common snps
3 months ago by bk11 ★ 2.4k
0
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0
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648
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Answer: Answer: Liftover - Picard and plink issues when performing liftover from CanFam4 to CanF
3 months ago by bk11 ★ 2.4k
1
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1
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1.0k
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Answer: Answer: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
4 months ago by bk11 ★ 2.4k
2
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0
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323
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Answer: Answer: OSCA -open .h5 file
4 months ago by bk11 ★ 2.4k
0
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1
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723
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Answer: Answer: There are several lines in Manhattan plot.
4 months ago by bk11 ★ 2.4k
0
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1
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439
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Answer: Answer: tool to find enhancer associated to gene list
4 months ago by bk11 ★ 2.4k
1
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1
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596
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Answer: Answer: How to compute Hudson's/Bhatia's FST in R OR with vcf?
4 months ago by bk11 ★ 2.4k
1
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0
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615
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Answer: Answer: Convert bed file from hg19 to GRCH38
4 months ago by bk11 ★ 2.4k
2
votes
2
replies
582
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Answer: Answer: Alternatives to snpflip to find ambigious and flipped snps
5 months ago by bk11 ★ 2.4k
2
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0
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1.6k
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Answer: Answer: keep getting error while trying to convert Seurat object into a H5ad file
5 months ago by bk11 ★ 2.4k
0
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0
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507
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Answer: Answer: Perform PCA
5 months ago by bk11 ★ 2.4k
1
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1
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889
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Answer: Answer: duplicates issues when trying to convert long to wide in R
5 months ago by bk11 ★ 2.4k
0
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0
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389
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Answer: Answer: Should I apply doublet detection for each pool seperately?
5 months ago by bk11 ★ 2.4k
1
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0
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447
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Answer: Answer: LD D-prime (D') calculation
6 months ago by bk11 ★ 2.4k
0
votes
0
replies
480
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Answer: Answer: Plink Error
6 months ago by bk11 ★ 2.4k
0
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0
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478
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Answer: Answer: XLOC gene id
6 months ago by bk11 ★ 2.4k
0
votes
0
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625
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Answer: Answer: PLINK Error: No valid entries in --score file
6 months ago by bk11 ★ 2.4k
1
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0
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577
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Answer: Answer: how to merge multiple files based on column header
updated 6 months ago by 43k • written 6 months ago by ★ 2.4k
3
votes
1
reply
765
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Answer: Answer: Integration Seurat different healthy samples (fresh vs frozen)
6 months ago by bk11 ★ 2.4k
0
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1
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814
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Answer: Answer: Doheatmap in seurat
6 months ago by bk11 ★ 2.4k
3
votes
0
replies
378
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Answer: Answer: How to retrieve the number of reads mapped for each chromosome in the BAM file o
6 months ago by bk11 ★ 2.4k
1
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1
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699
views
Answer: Answer: FPKM values for DE analysis - Why?
6 months ago by bk11 ★ 2.4k
0
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1
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884
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Answer: Answer: How to 'organize' multiple umap/genes generates with Seurat `FeaturePlot`in a sp
6 months ago by bk11 ★ 2.4k
1
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1
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533
views
Answer: Answer: How do I remove duplicate SNPs in PLINK from more than 1 data set?
6 months ago by bk11 ★ 2.4k
4
votes
0
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716
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Answer: Answer: Annoate complex heatmap columns
6 months ago by bk11 ★ 2.4k
0
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0
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548
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Answer: Answer: What do HAP A1 and HAP A2 mean in plink --freqx output?
6 months ago by bk11 ★ 2.4k
2
votes
1
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542
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Answer: Answer: Pre-imputation checks using 1000G data (hg19) for a hg38 VCF
6 months ago by bk11 ★ 2.4k
1
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1
reply
1.4k
views
Answer: Answer: Seurat changing order cluster shown in the violin plot
6 months ago by bk11 ★ 2.4k
0
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0
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466
views
Answer: Answer: Changing LFC font size on Complex Heatmap
6 months ago by bk11 ★ 2.4k
1
vote
0
replies
674
views
Answer: Answer: pheatmap
7 months ago by bk11 ★ 2.4k
3
votes
1
reply
496
views
Answer: Answer: Feature plot not applicable for RunTSNE object in seurat?
7 months ago by bk11 ★ 2.4k
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