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1
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2
replies
348
views
Nextflow crash on AWS Batch with transition error
BWA
Nextflow
AWS
updated 8 weeks ago by
barslmn
★ 2.1k • written 8 weeks ago by
hkarakurt
▴ 180
0
votes
0
replies
790
views
Comment:
Comment: CNV-calling single sample
3 months ago by
hkarakurt
▴ 180
0
votes
1
reply
447
views
Comment:
Comment: Transcript Based Annotation of Variants Using Annovar
3 months ago by
hkarakurt
▴ 180
3
votes
4
replies
447
views
Transcript Based Annotation of Variants Using Annovar
Annovar
SNV
Transcript
Variant
updated 3 months ago by
bk11
★ 2.4k • written 3 months ago by
hkarakurt
▴ 180
0
votes
0
replies
614
views
Comment:
Comment: 4 Fastq files for a single run generated by 10X
5 months ago by
hkarakurt
▴ 180
2
votes
2
replies
614
views
4 Fastq files for a single run generated by 10X
scRNA-Seq
Fastq
SRA
10X
5 months ago by
hkarakurt
▴ 180
0
votes
2
replies
443
views
Finding the Sequence of a Protein with Variant
WES
Variant-Annotation
WGS
updated 9 months ago by
Ram
43k • written 9 months ago by
hkarakurt
▴ 180
4
votes
6
replies
1.4k
views
Using Specific Regions of Genome as Reference for Alignment Using STAR
RNA-Seq
Alignment
STAR
updated 18 months ago by
Buffo
★ 2.4k • written 18 months ago by
hkarakurt
▴ 180
0
votes
0
replies
1.4k
views
Comment:
Comment: Using Specific Regions of Genome as Reference for Alignment Using STAR
18 months ago by
hkarakurt
▴ 180
2
votes
2
replies
954
views
Weighted gene regulatory networks
regulatory
ChIP-Seq
network
updated 18 months ago by
Marcel Ribeiro-Dantas
▴ 470 • written 3.9 years ago by
hkarakurt
▴ 180
2
votes
1
reply
490
views
A method to find if a variant is Genomic or an RNA-Editing variant
Editing
RNA-Seq
WES
RNA
Variant
updated 21 months ago by
i.sudbery
19k • written 21 months ago by
hkarakurt
▴ 180
0
votes
0
replies
655
views
Inserting Junctions Into Genome after Indexing with STAR
splicing
alternative
Junctions
STAR
RNA-Seq
23 months ago by
hkarakurt
▴ 180
0
votes
0
replies
1.8k
views
Comment:
Comment: Using DESeq2 as one sample vs. population
23 months ago by
hkarakurt
▴ 180
0
votes
0
replies
1.8k
views
Comment:
Comment: Using DESeq2 as one sample vs. population
23 months ago by
hkarakurt
▴ 180
0
votes
1
reply
1.8k
views
Comment:
Comment: Using DESeq2 as one sample vs. population
23 months ago by
hkarakurt
▴ 180
0
votes
1
reply
1.8k
views
Comment:
Comment: Using DESeq2 as one sample vs. population
23 months ago by
hkarakurt
▴ 180
4
votes
8
replies
1.8k
views
Using DESeq2 as one sample vs. population
expression
differential
test
DESeq2
RNA-Seq
one-sample
23 months ago by
hkarakurt
▴ 180
0
votes
0
replies
652
views
Comment:
Comment: Formula for Differential Expression Analysis of 2 conditions and 2 cell types
2.1 years ago by
hkarakurt
▴ 180
5
votes
2
replies
652
views
Formula for Differential Expression Analysis of 2 conditions and 2 cell types
Differential
edgeR
Expression
Formula
RNA-Seq
2.1 years ago by
hkarakurt
▴ 180
0
votes
0
replies
431
views
Prediction Tool for Pathogenicity of Alternatively Spliced Proteins
protein
mRNA
RNA-Seq
splicing
2.3 years ago by
hkarakurt
▴ 180
0
votes
0
replies
2.4k
views
Comment:
Comment: Oxford Nanopore Variant Calling Pipeline Calls Very Few of Variants of NA12878
2.5 years ago by
hkarakurt
▴ 180
8
votes
5
replies
2.4k
views
Oxford Nanopore Variant Calling Pipeline Calls Very Few of Variants of NA12878
Variant
Calling
SNP
MinION
ONT
2.5 years ago by
hkarakurt
▴ 180
0
votes
0
replies
2.4k
views
Comment:
Comment: Oxford Nanopore Variant Calling Pipeline Calls Very Few of Variants of NA12878
2.5 years ago by
hkarakurt
▴ 180
2
votes
1
reply
3.1k
views
MinION Data Examples (FAST5) Database
ONT
FAST5
MinION
DNA
updated 2.7 years ago by
GenoMax
142k • written 2.7 years ago by
hkarakurt
▴ 180
3
votes
1
reply
2.6k
views
Normalization and Batch Effect of bulk RNA-Seq
batch
RNA-Seq
correction
normalization
updated 2.8 years ago by
swbarnes2
14k • written 2.8 years ago by
hkarakurt
▴ 180
0
votes
1
reply
918
views
Multiple Transctipr ID (NM ) from MyVariantInfo
snp
transcript
dna-seq
updated 3.1 years ago by
prasundutta87
▴ 660 • written 3.1 years ago by
hkarakurt
▴ 180
1
vote
1
reply
671
views
Genomic Variant calling from RNA-Seq Data
RNA-Seq
SNP
Genomic
Variant
updated 3.2 years ago by
Kevin Blighe
87k • written 3.2 years ago by
hkarakurt
▴ 180
30
votes
15
replies
21k
views
8 follow
Using Seurat 3 Data for Pseudotime Analysis in Monocle 3
RNA-Seq
R
Seurat
Monocle
Pseudotime
updated 3.3 years ago by
kvshamsudheen
▴ 120 • written 4.9 years ago by
hkarakurt
▴ 180
0
votes
1
reply
1000
views
Comment:
C: Optimal Number of SNPs in NA12878 WES Data
3.4 years ago by
hkarakurt
▴ 180
0
votes
3
replies
1000
views
Optimal Number of SNPs in NA12878 WES Data
WES
GATK
SNP
3.4 years ago by
hkarakurt
▴ 180
4
votes
3
replies
1.8k
views
Calculating GC content around a specific genomic location
WGS
WES
GC
genome
SNP
updated 3.4 years ago by
benformatics
3.9k • written 3.4 years ago by
hkarakurt
▴ 180
0
votes
0
replies
738
views
Creating a stable batch-corrected scRNA-Seq data with multiple datasets and multiple integrations
RNA-Seq
scRNA-Seq
batch-effect
updated 17 days ago by
Ram
43k • written 3.4 years ago by
hkarakurt
▴ 180
2
votes
1
reply
1.1k
views
Trimmomatic trims most of the reverse strand
fastq
trim
trimmomatic
bwa
updated 3.6 years ago by
GenoMax
142k • written 3.6 years ago by
hkarakurt
▴ 180
0
votes
0
replies
1.0k
views
Comment:
C: SNPs on a single transcript of a gene with multiple transcripts
3.7 years ago by
hkarakurt
▴ 180
3
votes
3
replies
1.0k
views
SNPs on a single transcript of a gene with multiple transcripts
WGS
WES
SNP
Gene
updated 3.7 years ago by
caggtaagtat
★ 1.9k • written 3.7 years ago by
hkarakurt
▴ 180
0
votes
1
reply
1.1k
views
Comment:
C: Network Analysis of Each Cluster of Protein Interaction Network
3.8 years ago by
hkarakurt
▴ 180
0
votes
0
replies
1.1k
views
Comment:
C: Network Analysis of Each Cluster of Protein Interaction Network
3.8 years ago by
hkarakurt
▴ 180
4
votes
5
replies
1.1k
views
Network Analysis of Each Cluster of Protein Interaction Network
R
Python
Network
PPI
updated 3.8 years ago by
Shalu Jhanwar
▴ 520 • written 3.8 years ago by
hkarakurt
▴ 180
0
votes
0
replies
2.8k
views
Comment:
C: Differential Expression Analysis of Two Groups Time Series Data with Limma
4.5 years ago by
hkarakurt
▴ 180
1
vote
2
replies
2.8k
views
Differential Expression Analysis of Two Groups Time Series Data with Limma
limma
microarray
differential expression
RNA-Seq
4.6 years ago by
hkarakurt
▴ 180
0
votes
1
reply
4.1k
views
Comment:
C: Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
4.6 years ago by
hkarakurt
▴ 180
0
votes
1
reply
4.1k
views
Comment:
C: Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
4.6 years ago by
hkarakurt
▴ 180
0
votes
1
reply
4.1k
views
Comment:
C: Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
4.6 years ago by
hkarakurt
▴ 180
3
votes
8
replies
4.1k
views
Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
fpkm
scRNA-seq
RNA-Seq
tpm
batch-effect
updated 17 days ago by
Ram
43k • written 4.6 years ago by
hkarakurt
▴ 180
2
votes
1
reply
1.6k
views
Automatic Coloring for Each Node According to Names in Cytoscape
cytoscape
network
intercation
updated 4.8 years ago by
scooter
▴ 620 • written 4.8 years ago by
hkarakurt
▴ 180
0
votes
1
reply
21k
views
Comment:
C: Using Seurat 3 Data for Pseudotime Analysis in Monocle 3
4.9 years ago by
hkarakurt
▴ 180
0
votes
0
replies
21k
views
Comment:
C: Using Seurat 3 Data for Pseudotime Analysis in Monocle 3
4.9 years ago by
hkarakurt
▴ 180
0
votes
1
reply
21k
views
Comment:
C: Using Seurat 3 Data for Pseudotime Analysis in Monocle 3
4.9 years ago by
hkarakurt
▴ 180
0
votes
0
replies
2.1k
views
Comment:
C: Dunn Index for Clusters from scRNA-Seq
5.2 years ago by
hkarakurt
▴ 180
0
votes
1
reply
2.1k
views
Comment:
C: Dunn Index for Clusters from scRNA-Seq
5.2 years ago by
hkarakurt
▴ 180
91 results • Page
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