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Comment: C: query on a pre-process step involving GFF3
5.8 years ago by prasundutta87 ▴ 660
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854
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query on a pre-process step involving GFF3
GFF3 annotation
5.8 years ago by prasundutta87 ▴ 660
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1.2k
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Comment: C: some questions on GFF3
5.8 years ago by prasundutta87 ▴ 660
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1.2k
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some questions on GFF3
GFF GTF annotation
5.8 years ago by prasundutta87 ▴ 660
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2
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2.6k
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gffread query for gff to gtf conversion
GFF GTF annotation software
5.8 years ago by prasundutta87 ▴ 660
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0
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2.6k
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Answer: A: gffread query for gff to gtf conversion
5.8 years ago by prasundutta87 ▴ 660
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2.6k
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Comment: C: gffread query for gff to gtf conversion
5.8 years ago by prasundutta87 ▴ 660
11
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5
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8.8k
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HISAT2 MAPQ scoring scheme
alignment
5.8 years ago by prasundutta87 ▴ 660
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0
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939
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Comment: C: sanity check methods for checking genome assembly coordinate changes
5.8 years ago by prasundutta87 ▴ 660
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1
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939
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Comment: C: sanity check methods for checking genome assembly coordinate changes
5.8 years ago by prasundutta87 ▴ 660
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4
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939
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sanity check methods for checking genome assembly coordinate changes
assembly genome sequence
5.8 years ago by prasundutta87 ▴ 660
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0
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1.2k
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Comment: C: variant calling after reference genome is updated
5.8 years ago by prasundutta87 ▴ 660
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0
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1.2k
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Comment: C: variant calling after reference genome is updated
5.8 years ago by prasundutta87 ▴ 660
0
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1
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1.2k
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Comment: C: variant calling after reference genome is updated
5.8 years ago by prasundutta87 ▴ 660
3
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6
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1.2k
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variant calling after reference genome is updated
SNP variant calling WGS
5.8 years ago by prasundutta87 ▴ 660
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0
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4.8k
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Comment: C: Strategy in WGS variant calling using GATK (CombineGVCF step)
6.0 years ago by prasundutta87 ▴ 660
0
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1
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4.8k
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Comment: C: Strategy in WGS variant calling using GATK (CombineGVCF step)
6.0 years ago by prasundutta87 ▴ 660
4
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14
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4.8k
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Strategy in WGS variant calling using GATK (CombineGVCF step)
snp variant calling GATK WGS
6.0 years ago by prasundutta87 ▴ 660
0
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2
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4.8k
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Comment: C: Strategy in WGS variant calling using GATK (CombineGVCF step)
6.0 years ago by prasundutta87 ▴ 660
0
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0
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4.8k
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Comment: C: Strategy in WGS variant calling using GATK (CombineGVCF step)
6.0 years ago by prasundutta87 ▴ 660
0
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1
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4.8k
views
Comment: C: Strategy in WGS variant calling using GATK (CombineGVCF step)
6.0 years ago by prasundutta87 ▴ 660
1
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1
reply
4.8k
views
Comment: C: Strategy in WGS variant calling using GATK (CombineGVCF step)
6.0 years ago by prasundutta87 ▴ 660
0
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4
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1.1k
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addressing software versions
best practices gatk software error
6.2 years ago by prasundutta87 ▴ 660
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0
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1.1k
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Comment: C: addressing software versions
6.2 years ago by prasundutta87 ▴ 660
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0
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1.1k
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Comment: C: addressing software versions
6.2 years ago by prasundutta87 ▴ 660
1
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0
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12k
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Comment: C: fastqc adapter content
6.3 years ago by prasundutta87 ▴ 660
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0
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12k
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Comment: C: fastqc adapter content
6.3 years ago by prasundutta87 ▴ 660
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2
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12k
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Comment: C: fastqc adapter content
6.3 years ago by prasundutta87 ▴ 660
0
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2
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12k
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Comment: C: fastqc adapter content
6.3 years ago by prasundutta87 ▴ 660
8
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10
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12k
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fastqc adapter content
sequencing fastqc quality control
updated 6.3 years ago by 142k • written 6.3 years ago by ▴ 660
0
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1
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1.4k
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Comment: C: heterozygosity during variant calling in a non-model organism such as Bubalus Bu
6.3 years ago by prasundutta87 ▴ 660
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3
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1.4k
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heterozygosity during variant calling in a non-model organism such as Bubalus Bubalis
next-gen sequencing DNA-seq SNP
6.3 years ago by prasundutta87 ▴ 660
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2.3k
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Comment: C: excessive loading time for VCF files in IGV
6.5 years ago by prasundutta87 ▴ 660
0
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1
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2.3k
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Comment: C: excessive loading time for VCF files in IGV
6.5 years ago by prasundutta87 ▴ 660
0
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1
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2.3k
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Comment: C: excessive loading time for VCF files in IGV
6.5 years ago by prasundutta87 ▴ 660
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6
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2.3k
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excessive loading time for VCF files in IGV
snp visualization IGV
6.5 years ago by prasundutta87 ▴ 660
0
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0
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1.1k
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Comment: C: some good practices doubts
6.5 years ago by prasundutta87 ▴ 660
0
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0
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7.1k
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Answer: A: How to extract reads with a known variant form a bam file
6.5 years ago by prasundutta87 ▴ 660
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1
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4.7k
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Answer: A: annotating strand orientation
6.5 years ago by prasundutta87 ▴ 660
1
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0
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33k
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Answer: Answer: extract only geneID and gene symbol from GTF file
updated 15 months ago by 43k • written 6.5 years ago by ▴ 660
0
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0
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1.4k
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strand information issue for overlapping exons
RNA-Seq alignment exon
6.5 years ago by prasundutta87 ▴ 660
0
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0
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1.7k
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Comment: C: Splitting reference genome for alignment
6.5 years ago by prasundutta87 ▴ 660
3
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3
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1.7k
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Splitting reference genome for alignment
alignment genome gene
updated 6.5 years ago by 161k • written 6.5 years ago by ▴ 660
0
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0
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1.6k
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Comment: C: variant calling by GATK question about alignment
6.6 years ago by prasundutta87 ▴ 660
0
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1
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1.9k
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Comment: C: detecting allele specific expression of a gene at a specific locus without havin
6.7 years ago by prasundutta87 ▴ 660
1
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0
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4.8k
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Comment: C: long reads Pacbio SNP calling
6.7 years ago by prasundutta87 ▴ 660
0
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1
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1.4k
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Comment: C: allelic unbalance for multiplex PCR based amplicon data
6.7 years ago by prasundutta87 ▴ 660
0
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1
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1.9k
views
Comment: C: detecting allele specific expression of a gene at a specific locus without havin
6.7 years ago by prasundutta87 ▴ 660
1
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5
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1.9k
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detecting allele specific expression of a gene at a specific locus without having any information about parental genomes
RNA-Seq snp alignment gene
updated 6.7 years ago by ★ 1.6k • written 7.2 years ago by ▴ 660
1
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0
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1.9k
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Comment: C: Homozygous exonic markers from AI analysis
6.7 years ago by prasundutta87 ▴ 660
260 results • Page 4 of 6
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