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1
vote
0
replies
5.5k
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Comment:
Comment: is it .impute2 format equal to .gen format
3.0 years ago by
Peter Chung
▴ 200
1
vote
0
replies
5.5k
views
Comment:
Comment: is it .impute2 format equal to .gen format
3.0 years ago by
Peter Chung
▴ 200
8
votes
12
replies
5.5k
views
is it .impute2 format equal to .gen format
imputation
impute2
qctool
updated 3.0 years ago by
SHN
▴ 40 • written 6.8 years ago by
Peter Chung
▴ 200
0
votes
0
replies
2.8k
views
Comment:
Comment: Snakemake how to use glob_wilcards properly
3.1 years ago by
Peter Chung
▴ 200
1
vote
2
replies
2.8k
views
Snakemake how to use glob_wilcards properly
glob
wildcards
snakemake
python
3.1 years ago by
Peter Chung
▴ 200
0
votes
0
replies
1.5k
views
Answer:
A: from phased SNPs to haplotype blocks (or phase sets)
3.2 years ago by
Peter Chung
▴ 200
0
votes
0
replies
2.1k
views
Comment:
A: use gatk phased vcf as input file of HapCut2
3.2 years ago by
Peter Chung
▴ 200
0
votes
2
replies
2.1k
views
use gatk phased vcf as input file of HapCut2
HapCut2
gatk
phasing
vcf
3.2 years ago by
Peter Chung
▴ 200
2
votes
0
replies
1.5k
views
Answer:
A: hapcut2 output and figures
3.2 years ago by
Peter Chung
▴ 200
0
votes
0
replies
2.3k
views
Comment:
C: paired-end fastq file remove mismatching lengths of bases and qualities error
3.3 years ago by
Peter Chung
▴ 200
0
votes
3
replies
2.3k
views
paired-end fastq file remove mismatching lengths of bases and qualities error
bbtools
fastq
reformat
repair
updated 3.3 years ago by
Istvan Albert
100k • written 3.3 years ago by
Peter Chung
▴ 200
6
votes
2
replies
4.6k
views
question about the impute2 output format
gwas
snp
imputation
updated 3.7 years ago by
Kevin Blighe
87k • written 7.2 years ago by
Peter Chung
▴ 200
2
votes
1
reply
4.6k
views
Answer:
A: snakemake output directory
3.9 years ago by
Peter Chung
▴ 200
4
votes
7
replies
4.6k
views
snakemake output directory
snakemake
ngs
updated 19 days ago by
θΏ›
• 0 • written 3.9 years ago by
Peter Chung
▴ 200
0
votes
1
reply
4.6k
views
Comment:
C: snakemake output directory
3.9 years ago by
Peter Chung
▴ 200
0
votes
1
reply
4.6k
views
Comment:
C: snakemake output directory
3.9 years ago by
Peter Chung
▴ 200
0
votes
1
reply
1.4k
views
Comment:
C: gatk collectallelic counts error
3.9 years ago by
Peter Chung
▴ 200
0
votes
1
reply
1.4k
views
Comment:
C: gatk collectallelic counts error
3.9 years ago by
Peter Chung
▴ 200
0
votes
0
replies
1.4k
views
Comment:
C: gatk collectallelic counts error
4.0 years ago by
Peter Chung
▴ 200
0
votes
1
reply
1.4k
views
Comment:
C: gatk collectallelic counts error
4.0 years ago by
Peter Chung
▴ 200
1
vote
8
replies
1.4k
views
gatk collectallelic counts error
gatk
java
4.0 years ago by
Peter Chung
▴ 200
1
vote
0
replies
3.5k
views
Comment:
C: Haplotype resolving (phasing) from BAM file
4.0 years ago by
Peter Chung
▴ 200
0
votes
1
reply
1.4k
views
Comment:
C: ctDNAtools: an R package to work with ctDNA sequencing data
4.2 years ago by
Peter Chung
▴ 200
0
votes
1
reply
2.1k
views
ides capp-seq bioinformatics pipeline
sequence
SNP
ctDNA
updated 11 months ago by
Ram
43k • written 5.1 years ago by
Peter Chung
▴ 200
8
votes
2
replies
7.9k
views
gatk4 GenomicsDBImport intervals with whole genome
gatk
intervals
GenomicsDBImport
updated 4.3 years ago by
WouterDeCoster
47k • written 5.2 years ago by
Peter Chung
▴ 200
0
votes
1
reply
3.5k
views
Comment:
C: Haplotype resolving (phasing) from BAM file
5.0 years ago by
Peter Chung
▴ 200
0
votes
1
reply
1.5k
views
Comment:
C: call haplotypes in GATK HaplotypeCaller
5.0 years ago by
Peter Chung
▴ 200
0
votes
3
replies
1.5k
views
call haplotypes in GATK HaplotypeCaller
sequencing
GATK
Haplotype
HaplotypeCaller
5.0 years ago by
Peter Chung
▴ 200
0
votes
1
reply
2.5k
views
Comment:
C: picard markduplicate output smaller file
updated 5.3 years ago by
finswimmer
16k • written 5.3 years ago by
Peter Chung
▴ 200
0
votes
4
replies
2.5k
views
picard markduplicate output smaller file
picard
markduplicates
gatk
updated 11 months ago by
Ram
43k • written 5.3 years ago by
Peter Chung
▴ 200
1
vote
4
replies
1.5k
views
picard addorreplacereadgroups output issue
gatk
picard
readgroups
sequencing
java
5.4 years ago by
Peter Chung
▴ 200
1
vote
1
reply
2.0k
views
gatk HaplotyperCaller bam reference
gatk
haplotypercaller
bam
5.4 years ago by
Peter Chung
▴ 200
0
votes
3
replies
6.6k
views
TCGA UUID change back to TCGAbarcode
TCGA
RNA-Seq
updated 6.0 years ago by
Kevin Blighe
87k • written 7.6 years ago by
Peter Chung
▴ 200
0
votes
2
replies
1.8k
views
bwa mem without -M option how to continue using picard
sequencing
assembly
sequence
updated 6.1 years ago by
dariober
14k • written 6.1 years ago by
Peter Chung
▴ 200
3
votes
4
replies
3.2k
views
imputation only choose one population as reference panel
impute2
gwas
population
shapeit
updated 7.0 years ago by
ShirleyDai
▴ 50 • written 7.2 years ago by
Peter Chung
▴ 200
0
votes
0
replies
2.9k
views
Comment:
C: Subsetting individuals from IMPUTE2 ref files: .hap and .legend
7.2 years ago by
Peter Chung
▴ 200
1
vote
2
replies
2.3k
views
Questions: rsem.genes.normalized. data in GDC Legacy Archive file name to identify normal and tumor samples
TCGA
RNA-Seq
updated 7.4 years ago by
Nico Gerstner
• 0 • written 7.6 years ago by
Peter Chung
▴ 200
0
votes
1
reply
3.4k
views
Comment:
C: looking for TCGA gene expression Normal Samples
7.6 years ago by
Peter Chung
▴ 200
0
votes
3
replies
3.4k
views
looking for TCGA gene expression Normal Samples
genome
sequence
updated 7.7 years ago by
nwon
▴ 60 • written 7.7 years ago by
Peter Chung
▴ 200
39 results • Page
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