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Answer: Answer: Threshold for a value of RPKM considered significant
10 months ago by dsull ★ 6.0k
2
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621
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Answer: Answer: How to convert Kallisto output to Salmon?
10 months ago by dsull ★ 6.0k
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1.7k
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Answer: Answer: bar chart to show a p value of 0
10 months ago by dsull ★ 6.0k
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2
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1.7k
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Answer: Answer: No expression found with Salmon and Kallisto
10 months ago by dsull ★ 6.0k
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0
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421
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Answer: Answer: Appropriate RPKM cutoff
11 months ago by dsull ★ 6.0k
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0
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723
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Answer: Answer: How to generate cDNA file from genome FASTA and GTF?
11 months ago by dsull ★ 6.0k
2
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2
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1.2k
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Answer: Answer: Genes' fpkm values through cufflink
11 months ago by dsull ★ 6.0k
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0
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396
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Answer: Answer: Is it possible to use pseudoalignments.bam to run rMATs?
13 months ago by dsull ★ 6.0k
2
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0
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828
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Answer: Answer: Confused on strandedness, what are antisense transcripts?
13 months ago by dsull ★ 6.0k
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770
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Answer: Answer: Multiple samples and species with kallisto bus(tools)
14 months ago by dsull ★ 6.0k
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1.4k
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Answer: Answer: STARsolo
14 months ago by dsull ★ 6.0k
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1
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997
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Answer: Answer: kallisto -s o error
14 months ago by dsull ★ 6.0k
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0
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582
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Answer: Answer: Do indexes made with cDNA fasta file contain only mRNAs?
14 months ago by dsull ★ 6.0k
6
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1
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798
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Answer: Answer: Question about aggregating p values from different DE analysis methods for the s
14 months ago by dsull ★ 6.0k
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2
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3.3k
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Answer: Answer: How do one analyze data from SMART-Seq stranded kit (v4)?
14 months ago by dsull ★ 6.0k
2
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1
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1.1k
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Answer: Answer: Tools/pipeline for analysis of smart-seq3 data
16 months ago by dsull ★ 6.0k
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0
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904
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Answer: Answer: Can I add TPM values of Isoforms of the same gene to get total gene expression?
16 months ago by dsull ★ 6.0k
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1.1k
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Answer: Answer: Is it possible to convert transcript-level to gene-level dataset to use it in DE
16 months ago by dsull ★ 6.0k
2
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0
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556
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Answer: Answer: Circular deBuijn Graph
16 months ago by dsull ★ 6.0k
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0
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1.5k
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Answer: Answer: How to get transcriptome reference?
16 months ago by dsull ★ 6.0k
2
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1
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796
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Answer: Answer: Does the bootstrap in kallisto affect the BAM files?
17 months ago by dsull ★ 6.0k
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1
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1.4k
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Answer: Answer: Issues with chromosome file in kallisto
17 months ago by dsull ★ 6.0k
2
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1
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737
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Answer: Answer: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
17 months ago by dsull ★ 6.0k
2
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1
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733
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Answer: Answer: How to use Sleuth for Kallisto results in one directory?
17 months ago by dsull ★ 6.0k
2
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1
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2.3k
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Answer: Answer: Building index with kallisto, keeps getting killed.
17 months ago by dsull ★ 6.0k
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1
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1.2k
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Answer: Answer: FPKM file differentilly gene anaylsis
17 months ago by dsull ★ 6.0k
2
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1
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779
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Answer: Answer: Random forest with DE genes
17 months ago by dsull ★ 6.0k
2
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0
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514
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Answer: Answer: Understanding how-are-we-stranded-here and salmon parameters
17 months ago by dsull ★ 6.0k
1
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1
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1.2k
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Answer: Answer: Kallisto on identical transcript
19 months ago by dsull ★ 6.0k
2
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1
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1.8k
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Answer: Answer: What is the best practice for the analysis of single-cell RNA-seq of mouse and h
20 months ago by dsull ★ 6.0k
2
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0
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780
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Answer: Answer: Reference that justifies/explains an FPKM cutoff
21 months ago by dsull ★ 6.0k
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1
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2.5k
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Answer: Answer: How to interpret a tSNE or UMAP plot to get biological conclusions ?
21 months ago by dsull ★ 6.0k
3
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0
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584
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Answer: Answer: What are the advantages of GO and KEGG? What should be as next step?
21 months ago by dsull ★ 6.0k
1
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1
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2.2k
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Answer: Answer: How to use kallisto correctly?
22 months ago by dsull ★ 6.0k
1
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0
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961
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Answer: Answer: Top/best RNAseq workflow including anlaysis results for function annotation
22 months ago by dsull ★ 6.0k
0
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0
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759
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Answer: Answer: What are the data values in qRT-PCR for statistical testing? dCT? or 2^-dCT?
22 months ago by dsull ★ 6.0k
2
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1
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1.7k
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Answer: Answer: Issues with newer Kallisto versions (aka 0.46.1)
23 months ago by dsull ★ 6.0k
0
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0
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1.5k
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Answer: Answer: Trimming adaptors and primers for RNAseq reads
2.0 years ago by dsull ★ 6.0k
1
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1
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924
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Answer: Answer: Unspliced matrix from RNA velocity is it similar to pre-mRNA alignment?
2.0 years ago by dsull ★ 6.0k
1
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0
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1.8k
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Answer: Answer: How does Salmon bootstrapping work?
2.1 years ago by dsull ★ 6.0k
3
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1
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3.1k
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Answer: Answer: kallisto "gene" counts
2.1 years ago by dsull ★ 6.0k
2
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1
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1.9k
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Answer: Answer: Volcano plot with aggregated p values from Sleuth
2.1 years ago by dsull ★ 6.0k
0
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1
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1.3k
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Answer: Answer: Best transcriptome assembler
2.1 years ago by dsull ★ 6.0k
0
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1
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667
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Answer: Answer: RNAseq data DEG analysis - DESeq2 normalized data
2.1 years ago by dsull ★ 6.0k
0
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1
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1.1k
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Answer: Answer: A Question About Installing sleuth (in R) of kallisto-sleuth
2.1 years ago by dsull ★ 6.0k
3
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1
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4.8k
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Answer: Answer: Methodological problems are extremely common for enrichment analysis - beware th
2.2 years ago by dsull ★ 6.0k
2
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0
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1.0k
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Answer: Answer: SMARTseq2 scRNAseq and gene length normalization
2.2 years ago by dsull ★ 6.0k
1
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1
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1.5k
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Answer: Answer: RNA velocity similar mtx for spliced and unspliced region (dropseq)
2.3 years ago by dsull ★ 6.0k
1
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1
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746
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Answer: Answer: Prior to alignment of RNA-seq data
2.3 years ago by dsull ★ 6.0k
2
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1
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1.8k
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Answer: Answer: Why does TCGA RNA-seq pipeline starts from a BAM file?
2.3 years ago by dsull ★ 6.0k
193 results • Page 2 of 4
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