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Comment: Comment: RNA-seq bam file normalization
10 weeks ago by dsull ★ 6.0k
1
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1
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323
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Answer: Answer: scRNAseq output generated using STARsolo has gene_id rather than gene_name
10 weeks ago by dsull ★ 6.0k
2
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0
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393
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Comment: Comment: How I should set `STAR` parameters to keep all the intronic reads?
11 weeks ago by dsull ★ 6.0k
4
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1
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393
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Answer: Answer: How I should set `STAR` parameters to keep all the intronic reads?
11 weeks ago by dsull ★ 6.0k
1
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1
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658
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Comment: Comment: Huge decrease of BUS records using bustools
11 weeks ago by dsull ★ 6.0k
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1
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289
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Comment: Comment: Why does Phred+ encoding changes after trimming fastq files??
11 weeks ago by dsull ★ 6.0k
3
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608
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Answer: Answer: Would reaching out to local labs and startups help with my career transition?
12 weeks ago by dsull ★ 6.0k
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0
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639
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Answer: Answer: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
updated 12 weeks ago by 43k • written 12 weeks ago by ★ 6.0k
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639
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Comment: Comment: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
12 weeks ago by dsull ★ 6.0k
2
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0
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546
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Comment: Comment: How does kallisto handle multi mapped reads?
12 weeks ago by dsull ★ 6.0k
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0
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268
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Answer: Answer: Using tophat2 output for kallisto
12 weeks ago by dsull ★ 6.0k
0
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2
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546
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Comment: Comment: How does kallisto handle multi mapped reads?
12 weeks ago by dsull ★ 6.0k
2
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1
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406
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Answer: Answer: bulk seq vs. sc-seq
3 months ago by dsull ★ 6.0k
0
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1
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603
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Comment: Comment: Differential expression analysis with very high duplication rate
3 months ago by dsull ★ 6.0k
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1
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603
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Answer: Answer: Differential expression analysis with very high duplication rate
3 months ago by dsull ★ 6.0k
1
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0
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420
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Answer: Answer: How to do DESeq2 on Kallisto Data
3 months ago by dsull ★ 6.0k
0
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1
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480
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Comment: Comment: How to exclude sex-dependent genes from RNASEQ?
3 months ago by dsull ★ 6.0k
1
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0
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480
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Comment: Comment: How to exclude sex-dependent genes from RNASEQ?
3 months ago by dsull ★ 6.0k
1
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1
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667
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Comment: Comment: Why employ normalization methods, and how can they be utilized in DEG analysis?
3 months ago by dsull ★ 6.0k
2
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1
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661
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Comment: Comment: RNA seq, correlation, gene expression, STAR count
3 months ago by dsull ★ 6.0k
3
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1
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661
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Answer: Answer: RNA seq, correlation, gene expression, STAR count
3 months ago by dsull ★ 6.0k
0
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0
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1.1k
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Comment: Comment: I would like to exclude rRNA in RSEM and quantify other genes.
3 months ago by dsull ★ 6.0k
2
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1
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1.1k
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Comment: Comment: I would like to exclude rRNA in RSEM and quantify other genes.
3 months ago by dsull ★ 6.0k
0
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0
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144k
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Comment: Comment: The Biostar Handbook. A bioinformatics e-book for beginners.
3 months ago by dsull ★ 6.0k
1
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1
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1.1k
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Answer: Answer: I would like to exclude rRNA in RSEM and quantify it.
3 months ago by dsull ★ 6.0k
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0
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1.1k
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Comment: Comment: Troubleshooting RNA-seq data with DNA contamination
3 months ago by dsull ★ 6.0k
1
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1
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1.1k
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Comment: Comment: Troubleshooting RNA-seq data with DNA contamination
3 months ago by dsull ★ 6.0k
0
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1
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1.1k
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Comment: Comment: Troubleshooting RNA-seq data with DNA contamination
3 months ago by dsull ★ 6.0k
0
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1
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1.1k
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Comment: Comment: Troubleshooting RNA-seq data with DNA contamination
4 months ago by dsull ★ 6.0k
2
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2
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1.1k
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Comment: Comment: Can I estimate RNA velocity in Visium Spatial Gene Expression for FFPE
4 months ago by dsull ★ 6.0k
1
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1
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1.1k
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Comment: Comment: Can I estimate RNA velocity in Visium Spatial Gene Expression for FFPE
4 months ago by dsull ★ 6.0k
0
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0
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2.2k
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Comment: Comment: Determining computer time required
4 months ago by dsull ★ 6.0k
0
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0
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658
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Comment: Comment: Problem in Salmon when indexing Rattus_norvegicus
4 months ago by dsull ★ 6.0k
1
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0
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2.2k
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Comment: Comment: Determining computer time required
4 months ago by dsull ★ 6.0k
0
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2
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2.2k
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Comment: Comment: Determining computer time required
4 months ago by dsull ★ 6.0k
1
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2
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2.2k
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Comment: Comment: Determining computer time required
4 months ago by dsull ★ 6.0k
3
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1
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339
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Answer: Answer: Using Expression of a Gene as a Linear Regression Variable
4 months ago by dsull ★ 6.0k
2
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1
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409
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Answer: Answer: STAR index generation killed after "inserting junctions into the genome indices"
updated 4 months ago by 82k • written 4 months ago by ★ 6.0k
0
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0
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936
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Comment: Comment: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
4 months ago by dsull ★ 6.0k
0
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0
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936
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Comment: Comment: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
4 months ago by dsull ★ 6.0k
4
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0
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2.1k
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Comment: Comment: First experiences matter
4 months ago by dsull ★ 6.0k
1
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1
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739
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Comment: Comment: Log2 transformation is well used, but is there a good paper that can be used as
4 months ago by dsull ★ 6.0k
2
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1
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743
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Comment: Comment: Tests for the linear and non-linear relationship between two genes
4 months ago by dsull ★ 6.0k
0
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0
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880
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Comment: Comment: Inquiry Regarding Cutoff for Survival Analysis
4 months ago by dsull ★ 6.0k
0
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0
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596
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Comment: Comment: Kallisto-Bustools Output prpblems
4 months ago by dsull ★ 6.0k
1
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1
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596
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Answer: Answer: Kallisto-Bustools Output prpblems
4 months ago by dsull ★ 6.0k
0
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0
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612
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Comment: Comment: Kallisto-bustools output to Seurat Object
4 months ago by dsull ★ 6.0k
2
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1
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612
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Answer: Answer: Kallisto-bustools output to Seurat Object
4 months ago by dsull ★ 6.0k
0
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1
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799
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Comment: Comment: bwa-mem reproducibility
5 months ago by dsull ★ 6.0k
0
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1
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799
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Answer: Answer: bwa-mem reproducibility
5 months ago by dsull ★ 6.0k
621 results • Page 2 of 13
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