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950
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Comment: Comment: High Malat-1 expression in single cell data
11 days ago by dsull ★ 6.0k
1
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1
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270
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Answer: Answer: How to compute TPM normalized values for TCGA miRNA data?
11 days ago by dsull ★ 6.0k
1
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1
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950
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Comment: Comment: High Malat-1 expression in single cell data
15 days ago by dsull ★ 6.0k
1
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0
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427
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Comment: Comment: How does gene length effect the number of reads mapped
15 days ago by dsull ★ 6.0k
2
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0
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950
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Comment: Comment: High Malat-1 expression in single cell data
15 days ago by dsull ★ 6.0k
1
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1
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427
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Comment: Comment: How does gene length effect the number of reads mapped
15 days ago by dsull ★ 6.0k
1
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1
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282
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Answer: Answer: RNA-seq data for deep learning classification
15 days ago by dsull ★ 6.0k
0
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0
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440
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Comment: Comment: What purposes can TPM values be used for?
16 days ago by dsull ★ 6.0k
0
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0
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499
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Comment: Comment: How should I make kallisto indexes?
18 days ago by dsull ★ 6.0k
0
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0
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499
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Comment: Comment: How should I make kallisto indexes?
19 days ago by dsull ★ 6.0k
1
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1
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499
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Answer: Answer: How should I make kallisto indexes?
19 days ago by dsull ★ 6.0k
1
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0
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950
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Comment: Comment: High Malat-1 expression in single cell data
19 days ago by dsull ★ 6.0k
0
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0
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535
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Comment: Comment: What does it mean single base resolution in sequencing?
19 days ago by dsull ★ 6.0k
1
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1
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950
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Answer: Answer: High Malat-1 expression in single cell data
19 days ago by dsull ★ 6.0k
0
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1
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535
views
Comment: Comment: What does it mean single base resolution in sequencing?
19 days ago by dsull ★ 6.0k
0
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0
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535
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Answer: Answer: What does it mean single base resolution in sequencing?
19 days ago by dsull ★ 6.0k
1
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1
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2.3k
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Comment: Comment: NGS forensics: how to know if data is fabricated
20 days ago by dsull ★ 6.0k
2
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1
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2.3k
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Comment: Comment: NGS forensics: how to know if data is fabricated
20 days ago by dsull ★ 6.0k
0
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0
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808
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Comment: Comment: Heatmap and rna-seq
21 days ago by dsull ★ 6.0k
1
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1
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808
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Answer: Answer: Heatmap and rna-seq
21 days ago by dsull ★ 6.0k
2
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1
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381
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Answer: Answer: what is the purpose of indexing the reference genome (Kallisto)
22 days ago by dsull ★ 6.0k
0
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0
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611
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Comment: Comment: To get p-values for the TPM
23 days ago by dsull ★ 6.0k
1
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1
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611
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Comment: Comment: To get p-values for the TPM
24 days ago by dsull ★ 6.0k
1
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2
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611
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Answer: Answer: To get p-values for the TPM
24 days ago by dsull ★ 6.0k
0
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1
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624
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Comment: Comment: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
24 days ago by dsull ★ 6.0k
2
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1
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624
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Answer: Answer: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
25 days ago by dsull ★ 6.0k
0
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0
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395
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Answer: Answer: How to establish haplotype-specific gene expression levels
22 days ago by dsull ★ 6.0k
1
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0
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341
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Comment: Comment: from row count to tpm
26 days ago by dsull ★ 6.0k
1
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0
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211
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Comment: Comment: Help/Direction Needed for Data Analysis of RNA
4 weeks ago by dsull ★ 6.0k
1
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1
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589
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Comment: Comment: STARsolo ; Reads are NOT mapped to transcriptome
5 weeks ago by dsull ★ 6.0k
1
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1
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589
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Answer: Answer: STARsolo ; Reads are NOT mapped to transcriptome
5 weeks ago by dsull ★ 6.0k
0
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1
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395
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Comment: Comment: How to to establish haplotype-specific gene expression levels
5 weeks ago by dsull ★ 6.0k
0
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0
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307
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Comment: Comment: rRNA depletion of RIP-seq samples
5 weeks ago by dsull ★ 6.0k
1
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1
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225
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Comment: Comment: In need of help with my RNA velocity trajectory inference pipeline!
5 weeks ago by dsull ★ 6.0k
1
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0
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290
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Comment: Comment: Removing adapters in all the RNAseq samples regardless if they have or not, is i
6 weeks ago by dsull ★ 6.0k
0
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0
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586
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Comment: Comment: Installing Cell Ranger
6 weeks ago by dsull ★ 6.0k
0
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0
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427
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Comment: Comment: DESeq2 and normalization
7 weeks ago by dsull ★ 6.0k
0
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0
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600
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Comment: Comment: STAR aligner options
7 weeks ago by dsull ★ 6.0k
1
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0
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917
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Comment: Comment: Only one read per run - Trying to use CellRangerv7
7 weeks ago by dsull ★ 6.0k
0
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1
reply
600
views
Comment: Comment: STAR aligner options
7 weeks ago by dsull ★ 6.0k
1
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1
reply
427
views
Answer: Answer: DESeq2 and normalization
7 weeks ago by dsull ★ 6.0k
0
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0
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7.2k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
7 weeks ago by dsull ★ 6.0k
0
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1
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7.2k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
7 weeks ago by dsull ★ 6.0k
1
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1
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769
views
Comment: Comment: cutadapt not trimming all adapters in PE Illumina sequencing
8 weeks ago by dsull ★ 6.0k
1
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1
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769
views
Answer: Answer: cutadapt not trimming all adapters in PE Illumina sequencing
8 weeks ago by dsull ★ 6.0k
0
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0
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257
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Comment: Comment: DEG (Differential expression gene) analysis
8 weeks ago by dsull ★ 6.0k
0
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1
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257
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Answer: Answer: DEG (Differential expression gene) analysis
8 weeks ago by dsull ★ 6.0k
3
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1
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391
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Comment: Comment: Average expression of a sample in single-cell data
8 weeks ago by dsull ★ 6.0k
1
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0
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422
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Answer: Answer: scRNAseq normalization
8 weeks ago by dsull ★ 6.0k
0
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0
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172
views
Answer: Answer: STAR --sjdbGTFfile in alignment step
9 weeks ago by dsull ★ 6.0k
621 results • Page 1 of 13
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