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524
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Comment: Comment: High Malat-1 expression in single cell data
2 days ago by dsull ★ 6.0k
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280
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Comment: Comment: How does gene length effect the number of reads mapped
2 days ago by dsull ★ 6.0k
1
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524
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Comment: Comment: High Malat-1 expression in single cell data
2 days ago by dsull ★ 6.0k
0
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1
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280
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Comment: Comment: How does gene length effect the number of reads mapped
2 days ago by dsull ★ 6.0k
1
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1
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231
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Answer: Answer: RNA-seq data for deep learning classification
2 days ago by dsull ★ 6.0k
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309
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Comment: Comment: What purposes can TPM values be used for?
3 days ago by dsull ★ 6.0k
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423
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Comment: Comment: How should I make kallisto indexes?
5 days ago by dsull ★ 6.0k
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423
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Comment: Comment: How should I make kallisto indexes?
6 days ago by dsull ★ 6.0k
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1
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423
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Answer: Answer: How should I make kallisto indexes?
6 days ago by dsull ★ 6.0k
1
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524
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Comment: Comment: High Malat-1 expression in single cell data
6 days ago by dsull ★ 6.0k
0
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0
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438
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Comment: Comment: What does it mean single base resolution in sequencing?
6 days ago by dsull ★ 6.0k
1
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1
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524
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Answer: Answer: High Malat-1 expression in single cell data
6 days ago by dsull ★ 6.0k
0
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1
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438
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Comment: Comment: What does it mean single base resolution in sequencing?
6 days ago by dsull ★ 6.0k
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0
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438
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Answer: Answer: What does it mean single base resolution in sequencing?
6 days ago by dsull ★ 6.0k
1
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1
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1.9k
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Comment: Comment: NGS forensics: how to know if data is fabricated
7 days ago by dsull ★ 6.0k
2
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1
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1.9k
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Comment: Comment: NGS forensics: how to know if data is fabricated
7 days ago by dsull ★ 6.0k
0
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0
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713
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Comment: Comment: Heatmap and rna-seq
8 days ago by dsull ★ 6.0k
1
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1
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713
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Answer: Answer: Heatmap and rna-seq
8 days ago by dsull ★ 6.0k
2
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1
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334
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Answer: Answer: what is the purpose of indexing the reference genome (Kallisto)
9 days ago by dsull ★ 6.0k
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0
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518
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Comment: Comment: To get p-values for the TPM
10 days ago by dsull ★ 6.0k
1
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1
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518
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Comment: Comment: To get p-values for the TPM
11 days ago by dsull ★ 6.0k
1
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2
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518
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Answer: Answer: To get p-values for the TPM
11 days ago by dsull ★ 6.0k
0
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1
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522
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Comment: Comment: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
11 days ago by dsull ★ 6.0k
2
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1
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522
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Answer: Answer: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
12 days ago by dsull ★ 6.0k
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0
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361
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Answer: Answer: How to establish haplotype-specific gene expression levels
9 days ago by dsull ★ 6.0k
1
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291
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Comment: Comment: from row count to tpm
13 days ago by dsull ★ 6.0k
1
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197
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Comment: Comment: Help/Direction Needed for Data Analysis of RNA
18 days ago by dsull ★ 6.0k
1
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1
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538
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Comment: Comment: STARsolo ; Reads are NOT mapped to transcriptome
25 days ago by dsull ★ 6.0k
1
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1
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538
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Answer: Answer: STARsolo ; Reads are NOT mapped to transcriptome
25 days ago by dsull ★ 6.0k
0
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1
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361
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Comment: Comment: How to to establish haplotype-specific gene expression levels
25 days ago by dsull ★ 6.0k
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0
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281
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Comment: Comment: rRNA depletion of RIP-seq samples
26 days ago by dsull ★ 6.0k
1
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1
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218
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Comment: Comment: In need of help with my RNA velocity trajectory inference pipeline!
27 days ago by dsull ★ 6.0k
1
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0
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280
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Comment: Comment: Removing adapters in all the RNAseq samples regardless if they have or not, is i
4 weeks ago by dsull ★ 6.0k
0
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0
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519
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Comment: Comment: Installing Cell Ranger
4 weeks ago by dsull ★ 6.0k
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0
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406
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Comment: Comment: DESeq2 and normalization
5 weeks ago by dsull ★ 6.0k
0
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0
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575
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Comment: Comment: STAR aligner options
5 weeks ago by dsull ★ 6.0k
1
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0
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875
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Comment: Comment: Only one read per run - Trying to use CellRangerv7
5 weeks ago by dsull ★ 6.0k
0
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1
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575
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Comment: Comment: STAR aligner options
5 weeks ago by dsull ★ 6.0k
1
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1
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406
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Answer: Answer: DESeq2 and normalization
5 weeks ago by dsull ★ 6.0k
0
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0
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7.1k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
5 weeks ago by dsull ★ 6.0k
0
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1
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7.1k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
5 weeks ago by dsull ★ 6.0k
1
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1
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741
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Comment: Comment: cutadapt not trimming all adapters in PE Illumina sequencing
6 weeks ago by dsull ★ 6.0k
1
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1
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741
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Answer: Answer: cutadapt not trimming all adapters in PE Illumina sequencing
6 weeks ago by dsull ★ 6.0k
0
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0
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244
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Comment: Comment: DEG (Differential expression gene) analysis
6 weeks ago by dsull ★ 6.0k
0
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1
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244
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Answer: Answer: DEG (Differential expression gene) analysis
6 weeks ago by dsull ★ 6.0k
3
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1
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376
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Comment: Comment: Average expression of a sample in single-cell data
6 weeks ago by dsull ★ 6.0k
1
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0
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399
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Answer: Answer: scRNAseq normalization
6 weeks ago by dsull ★ 6.0k
0
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0
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163
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Answer: Answer: STAR --sjdbGTFfile in alignment step
7 weeks ago by dsull ★ 6.0k
1
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0
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324
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Comment: Comment: RNA-seq bam file normalization
8 weeks ago by dsull ★ 6.0k
1
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1
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302
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Answer: Answer: scRNAseq output generated using STARsolo has gene_id rather than gene_name
8 weeks ago by dsull ★ 6.0k
619 results • Page 1 of 13
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