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Answer: Answer: Create a new bed file with all pairwise combinations between two other bed files
5 days ago by Pierre Lindenbaum 161k
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343
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Answer: Answer: Why gatk VariantAnnotator required bam and coverage files
6 days ago by Pierre Lindenbaum 161k
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344
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Answer: Answer: Figures are disappeared from html report of SnpEff
6 days ago by Pierre Lindenbaum 161k
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440
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Answer: Answer: Fetch table from clinvar database according to a list of rsid
6 days ago by Pierre Lindenbaum 161k
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232
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Answer: Answer: HaplotypeCaller - only SNPs
8 days ago by Pierre Lindenbaum 161k
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260
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Answer: Answer: Difference between samtools "-f 9" and "-f 11"
8 days ago by Pierre Lindenbaum 161k
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349
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Answer: Answer: How to slice a gvcf file with tabix?
9 days ago by Pierre Lindenbaum 161k
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239
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Answer: Answer: Getting the nucleotide sequence of proteins, having their UniProt IDs
9 days ago by Pierre Lindenbaum 161k
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517
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Answer: Answer: Filtering sam or bam file with maximum matching region
11 days ago by Pierre Lindenbaum 161k
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685
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Answer: Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi
12 days ago by Pierre Lindenbaum 161k
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591
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Answer: Answer: Indexing the Reference Genome is not done in STAR
13 days ago by Pierre Lindenbaum 161k
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876
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Answer: Answer: Questions about a bug when transferring cram file to bam file
14 days ago by Pierre Lindenbaum 161k
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458
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Answer: Answer: Sheep reference genome remapping coordinates
14 days ago by Pierre Lindenbaum 161k
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312
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Answer: Answer: Bwa sampe - BGI
15 days ago by Pierre Lindenbaum 161k
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402
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Answer: Answer: Best way to deal with overlapping read names in merged BAM files
16 days ago by Pierre Lindenbaum 161k
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254
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Answer: Answer: CombineGVCFs vs. MergeVcfs
16 days ago by Pierre Lindenbaum 161k
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235
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Answer: Answer: Problem with Sniffles pipeline and SV calling help
16 days ago by Pierre Lindenbaum 161k
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391
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Answer: Answer: How to download large-scale cDNA sequences from NCBI effectively ?
18 days ago by Pierre Lindenbaum 161k
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579
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Answer: Answer: Can you suggest a protein PDB that has two chainst but only 50 total number of a
19 days ago by Pierre Lindenbaum 161k
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328
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Answer: Answer: Merging vcf files with bcftools ([E::get_intv] Failed to parse TBX_VCF, was wron
20 days ago by Pierre Lindenbaum 161k
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212
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Answer: Answer: Finding variants within a subset of a BAM file
21 days ago by Pierre Lindenbaum 161k
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273
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Answer: Answer: Downsampling long-read BAM files
21 days ago by Pierre Lindenbaum 161k
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446
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Answer: Answer: Database or Tool: Identifying Gene Regions (Exon/Intron/UTR) from Chromosome Pos
22 days ago by Pierre Lindenbaum 161k
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146
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Answer: Answer: BCFTools install vcfmerge.o error
22 days ago by Pierre Lindenbaum 161k
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218
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Answer: Answer: small RNA creating .bam from .sam file
23 days ago by Pierre Lindenbaum 161k
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256
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Answer: Answer: latest dbSNP (ncbi) which genome assembly
23 days ago by Pierre Lindenbaum 161k
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382
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Answer: Answer: How to I use prefetch (SRAtoolkit) on multiple accessions all at one?
25 days ago by Pierre Lindenbaum 161k
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2
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541
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Answer: Answer: Artificial deletion in bam
27 days ago by Pierre Lindenbaum 161k
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353
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Answer: Answer: Tool to Identify Gene, Regulatory Role, and Function at Integration Sites
27 days ago by Pierre Lindenbaum 161k
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267
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Answer: Answer: filtering VCF sites and impose whatever excluded ad missing
27 days ago by Pierre Lindenbaum 161k
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564
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Answer: Answer: frequency of each variant per sample
27 days ago by Pierre Lindenbaum 161k
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345
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Answer: Answer: Problems with Nextflow to run NanoRtax Pipeline
updated 27 days ago by 6.4k • written 28 days ago by 161k
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274
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Answer: Answer: Multiple iterations of sorted bam output files with picard SortSam
28 days ago by Pierre Lindenbaum 161k
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231
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Answer: Answer: Using nextflow for performing quality control and trimming of reads
29 days ago by Pierre Lindenbaum 161k
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315
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Answer: Answer: I am unsure why my files are not being accepted in bedtools jaccard, any tips?
4 weeks ago by Pierre Lindenbaum 161k
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294
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Answer: Answer: BioGRID REST - How to retrieve all the protein interactions?
4 weeks ago by Pierre Lindenbaum 161k
4
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0
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1.1k
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Answer: Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
4 weeks ago by Pierre Lindenbaum 161k
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366
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Answer: Answer: diffbind : killed dba.count(DBsample, bParallel=FALSE)
4 weeks ago by Pierre Lindenbaum 161k
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388
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Answer: Answer: calculate mismatch rate from VCF file
4 weeks ago by Pierre Lindenbaum 161k
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311
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Answer: Answer: Confirm if a genome position falls into a coding exon
5 weeks ago by Pierre Lindenbaum 161k
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411
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Answer: Answer: 0-based coordinates from samtools depth
5 weeks ago by Pierre Lindenbaum 161k
3
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2
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689
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Answer: Answer: Variant calling of GBS data
5 weeks ago by Pierre Lindenbaum 161k
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707
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Answer: Answer: How to filter Illumina Nirvana variant annotation?
5 weeks ago by Pierre Lindenbaum 161k
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0
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396
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Answer: Answer: What is meant by 'genomic order' in gatk's GatherVcfs, and how do I check for it
5 weeks ago by Pierre Lindenbaum 161k
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541
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Answer: Answer: I have a bed file containing genomic locations and A or B compartment annotation
5 weeks ago by Pierre Lindenbaum 161k
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287
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Answer: Answer: Annotating indels and SNVs
5 weeks ago by Pierre Lindenbaum 161k
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387
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Answer: Answer: HISAT2 installation issue
5 weeks ago by Pierre Lindenbaum 161k
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432
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Answer: Answer: bcftools select sites with multiple combinatio ns of FILTER column
5 weeks ago by Pierre Lindenbaum 161k
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606
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Answer: Answer: Fine-tuning NCBI taxid / taxidlist
6 weeks ago by Pierre Lindenbaum 161k
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315
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Answer: Answer: Annotate genes from gtf file to vcf file
6 weeks ago by Pierre Lindenbaum 161k
4,689 results • Page 1 of 94
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