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2
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1
reply
419
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Answer: Answer: How to find what is the most significantly modulated gene in GEO2R analysis?
12 weeks ago by ahmad mousavi ▴ 800
2
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2
replies
457
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Need a spatial transcriptomics cancer data
NGS scRNA-Seq Single-Cell
updated 3 months ago by ★ 1.8k • written 3 months ago by ▴ 800
0
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1
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476
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Comment: Comment: average of one column for each category of another column
3 months ago by ahmad mousavi ▴ 800
0
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1
reply
913
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Comment: Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
3 months ago by ahmad mousavi ▴ 800
0
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1
reply
635
views
Answer: Answer: RNAseq analysis: how to add new gene into an existing worm based reference
3 months ago by ahmad mousavi ▴ 800
9
votes
2
replies
546
views
Batch effect correction between Bulk RNA-Seq and scRNA-Seq's clusters
rna-seq scrna-seq deg deseq2
updated 6 months ago by 4.2k • written 6 months ago by ▴ 800
0
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0
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855
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Answer: Answer: STAR ALIGNMENT
6 months ago by ahmad mousavi ▴ 800
0
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0
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913
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Comment: Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
6 months ago by ahmad mousavi ▴ 800
0
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1
reply
913
views
Comment: Comment: What are the steps for Germline and Somatic CNV detection using CNVkit?
6 months ago by ahmad mousavi ▴ 800
2
votes
6
replies
913
views
What are the steps for Germline and Somatic CNV detection using CNVkit?
cnv cnvkit
updated 3 months ago by 43k • written 6 months ago by ▴ 800
0
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0
replies
3.0k
views
Answer: Answer: Can we compare bulk RNAseq samples and single cell rnaseq clusters?
10 months ago by ahmad mousavi ▴ 800
0
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0
replies
497
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Comment: Comment: Estimating sample size from bulk RNAseq data
10 months ago by ahmad mousavi ▴ 800
0
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1
reply
504
views
How to add annotation columns with specific colors to the heatmap?
R heatmap RNA-seq
updated 11 months ago by 43k • written 11 months ago by ▴ 800
0
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1
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1.2k
views
Answer: Answer: Variant identified, What next?
21 months ago by ahmad mousavi ▴ 800
0
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0
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478
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Comment: Comment: Carp mitochondrial genome
21 months ago by ahmad mousavi ▴ 800
1
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0
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769
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Answer: Answer: BEDtools merge output
21 months ago by ahmad mousavi ▴ 800
0
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0
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569
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Answer: Answer: Does it make sense to analyze snRNA-seq data with low nUMI per gene?
21 months ago by ahmad mousavi ▴ 800
1
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0
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2.3k
views
Answer: Answer: scRNA-seq: Which is the best method for computing the % of similarity between tw
21 months ago by ahmad mousavi ▴ 800
1
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1
reply
2.4k
views
Answer: Answer: Fold change cutoff for downregulated genes
22 months ago by ahmad mousavi ▴ 800
1
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0
replies
1.7k
views
Answer: Answer: Skills for industry career in bioinformatics
22 months ago by ahmad mousavi ▴ 800
0
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1
reply
774
views
Answer: Answer: Expected runtimes for GATK variant calling?
22 months ago by ahmad mousavi ▴ 800
2
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0
replies
970
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Answer: Answer: Bulk RNA-seq with genome but without gene annotation
23 months ago by ahmad mousavi ▴ 800
3
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0
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513
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Answer: Answer: Using gtf file to get gene positions
23 months ago by ahmad mousavi ▴ 800
0
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1
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60k
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Answer: Answer: What Are The Most Common Stupid Mistakes In Bioinformatics?
23 months ago by ahmad mousavi ▴ 800
1
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1
reply
507
views
Barcode whitelist in seurat
scRNA ngs scRNA-seq
updated 23 months ago by 21k • written 23 months ago by ▴ 800
0
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0
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766
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Comment: Comment: How to demultiplex single cell rna-seq based on SNP mutation?
23 months ago by ahmad mousavi ▴ 800
1
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0
replies
1.2k
views
Answer: Answer: What's the best 3rd party software for doing analysis on 10X Genomics ATAC-seq d
23 months ago by ahmad mousavi ▴ 800
0
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1
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1.3k
views
Comment: Comment: I don't understand the HDF5 file from 10x genomics scRNAseq
23 months ago by ahmad mousavi ▴ 800
0
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2
replies
766
views
How to demultiplex single cell rna-seq based on SNP mutation?
NGS RNA-SEQ singlecell scRNA-seq
23 months ago by ahmad mousavi ▴ 800
16
votes
5
replies
13k
views
6 follow
Tutorial: Easy way to do GO enrichment in R
enrichr RNA-Seq gene R
updated 14 months ago by 43k • written 6.5 years ago by ▴ 800
4
votes
3
replies
5.5k
views
How to compare two Seurat object (sample) in order to find top markers?
scRNA-SEQ NGS rna-seq
updated 2.4 years ago by ▴ 100 • written 2.6 years ago by ▴ 800
0
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0
replies
1.1k
views
Comment: Comment: Finding cluster specific markers in the Seurat object
2.6 years ago by ahmad mousavi ▴ 800
0
votes
2
replies
1.1k
views
Finding cluster specific markers in the Seurat object
sequencing seurat scRNA scRNA-SEQ
2.6 years ago by ahmad mousavi ▴ 800
0
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1
reply
6.4k
views
Comment: Comment: Which trajectory method is better !?
2.6 years ago by ahmad mousavi ▴ 800
6
votes
4
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6.4k
views
Which trajectory method is better !?
cell monocle3 monocle scRNA-SEQ single RNA-SEQ
2.6 years ago by ahmad mousavi ▴ 800
0
votes
0
replies
595
views
How to merge Bulk ATAC-SEQ with scATAC-SEQ result?
atac scATAC
2.7 years ago by ahmad mousavi ▴ 800
0
votes
0
replies
1.1k
views
Remove cells from Seurat object based on gene expression of makers
rnaseq singlecell seurat scrna
3.0 years ago by ahmad mousavi ▴ 800
0
votes
2
replies
2.1k
views
Comment: Comment: How can I use log2 RPM data(RNA-seq) to find differentially expressed genes?
3.0 years ago by ahmad mousavi ▴ 800
1
vote
1
reply
872
views
Rare cell population in single cell ATAC-Seq
atac-seq atac
updated 3.1 years ago by ▴ 110 • written 3.1 years ago by ▴ 800
0
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0
replies
1.2k
views
No peaks found in Signac's FindMarker
seurat atac-seq Signac atac singlecell
3.1 years ago by ahmad mousavi ▴ 800
0
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0
replies
829
views
Answer: A: SNP index definition
3.4 years ago by ahmad mousavi ▴ 800
0
votes
3
replies
3.0k
views
How to handle DNA methylation duplication in Bismark?
sequencing alignment
updated 3.7 years ago by 20 • written 6.4 years ago by ▴ 800
1
vote
5
replies
2.1k
views
How to make annotation (GFF/GTF) for transcriptome?
RNA-Seq Assembly sequencing alignment
updated 4.0 years ago by 8.6k • written 4.0 years ago by ▴ 800
0
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0
replies
1.7k
views
Comment: C: Bacterial RNAseq - Help for beginner
4.1 years ago by ahmad mousavi ▴ 800
0
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2
replies
1.7k
views
Answer: A: Bacterial RNAseq - Help for beginner
4.1 years ago by ahmad mousavi ▴ 800
0
votes
1
reply
491
views
How to make comparison between human and mouse pathways for a gene list?
RNA-Seq
4.1 years ago by ahmad mousavi ▴ 800
20
votes
7
replies
6.4k
views
Tutorial: Showing up and down regulated GO and pathway using enrichR and ggplot2
ggplot2 RNA-Seq R
updated 14 months ago by 43k • written 5.6 years ago by ▴ 800
0
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0
replies
13k
views
Comment: C: How to make k-means clustering plot for relative expression?
4.1 years ago by ahmad mousavi ▴ 800
0
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0
replies
3.4k
views
Comment: C: How to make GFF file based on assembled transcriptome and genome sequence?
4.2 years ago by ahmad mousavi ▴ 800
0
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1
reply
3.4k
views
Comment: C: How to make GFF file based on assembled transcriptome and genome sequence?
4.2 years ago by ahmad mousavi ▴ 800
113 results • Page 1 of 3
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