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Comment: Comment: 10x GEX and ADT data analysis in Seurat
5 weeks ago by ATpoint 82k
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289
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Answer: Answer: How to handle more than 1 SRA Run per Experiment?
5 weeks ago by ATpoint 82k
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311
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Comment: Comment: DepMap: siRNA and CRSIPR discrepancy
5 weeks ago by ATpoint 82k
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372
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Comment: Comment: Questions about transfering wgs file to reference genome file
5 weeks ago by ATpoint 82k
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1.0k
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Comment: Comment: RNAseq of primary tumor and metastases in two different organ
5 weeks ago by ATpoint 82k
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372
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Comment: Comment: Questions about transfering wgs file to reference genome file
5 weeks ago by ATpoint 82k
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2.4k
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Comment: Comment: Shannon vs Simpson for TCR diversity estimation
5 weeks ago by ATpoint 82k
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399
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Comment: Comment: 10x GEX and ADT data analysis in Seurat
5 weeks ago by ATpoint 82k
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201
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Answer: Answer: Shared pathways up in disease blood and tissue relative to healthy blood (scRNA-
5 weeks ago by ATpoint 82k
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1.3k
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Comment: Comment: ¿How I know if it is a batch effect or are real differences between my controls
6 weeks ago by ATpoint 82k
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416
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Comment: Comment: lncRNA from TCGA
6 weeks ago by ATpoint 82k
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398
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Comment: Comment: WGCNA website
6 weeks ago by ATpoint 82k
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254
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Comment: Comment: TMM normalization with DESeq2
6 weeks ago by ATpoint 82k
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254
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Answer: Answer: TMM normalization with DESeq2
updated 6 weeks ago by 43k • written 6 weeks ago by 82k
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212
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Comment: Comment: Batch effect issue in RNA velocity analysis
6 weeks ago by ATpoint 82k
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405
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Comment: Comment: Single cell analysis with "meta".tsv.gz file
6 weeks ago by ATpoint 82k
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407
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Comment: Comment: Homer giving troubles
6 weeks ago by ATpoint 82k
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300
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Comment: Comment: P-value Threshold Consideration in Multi-Sample RNA-Seq Experiment
6 weeks ago by ATpoint 82k
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298
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Comment: Comment: can't download and use mageck-vispr for R?
6 weeks ago by ATpoint 82k
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219
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Answer: Answer: Can't download txdbmaker package
6 weeks ago by ATpoint 82k
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598
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Comment: Comment: Installing Cell Ranger
6 weeks ago by ATpoint 82k
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279
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Comment: Comment: What are crucial apps/ scripts for cancer genome/data analysis that can be set
6 weeks ago by ATpoint 82k
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330
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Comment: Comment: Removing batch effect using combat-seq
6 weeks ago by ATpoint 82k
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1
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598
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Comment: Comment: Installing Cell Ranger
6 weeks ago by ATpoint 82k
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1
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330
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Comment: Comment: Removing batch effect using combat-seq
6 weeks ago by ATpoint 82k
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407
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Answer: Answer: Homer giving troubles
7 weeks ago by ATpoint 82k
4
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321
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Answer: Answer: Seeking Proper Interpretation of Dispersion Graph: A Call for Statistical and Bi
7 weeks ago by ATpoint 82k
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450
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Comment: Comment: Problem generating paired end reads when converting Cell Ranger's BAM result to
7 weeks ago by ATpoint 82k
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0
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285
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Answer: Answer: How to calculate depth of coverage and applying read depth filter
7 weeks ago by ATpoint 82k
2
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1
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450
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Answer: Answer: Problem generating paired end reads when converting Cell Ranger's BAM result to
7 weeks ago by ATpoint 82k
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1
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285
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Comment: Comment: Gene reads all zero for each sample
7 weeks ago by ATpoint 82k
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271
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Comment: Comment: Flow Cytometry Data Analysis by Seurat
7 weeks ago by ATpoint 82k
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1
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365
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Comment: Comment: Volcano Plot Output Inquiry: Graphs Facing Down
7 weeks ago by ATpoint 82k
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1
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12k
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Comment: Comment: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
7 weeks ago by ATpoint 82k
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1
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707
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Comment: Comment: Piping samtools to R
7 weeks ago by ATpoint 82k
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1
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707
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Comment: Comment: Piping samtools to R
7 weeks ago by ATpoint 82k
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1
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244
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Comment: Comment: Error with goodSamplesGenes()
7 weeks ago by ATpoint 82k
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1
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442
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Answer: Answer: Limma compare between 3 conditions vs 2 conditions
7 weeks ago by ATpoint 82k
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1
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477
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Comment: Comment: Salmon Quantification in Alignment based-mode
7 weeks ago by ATpoint 82k
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2
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292
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Comment: Comment: High number of detected genes per cell after doublet removal - scRNAseq data
7 weeks ago by ATpoint 82k
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1
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271
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Comment: Comment: Cell communacations analysis. I only have the proteome of one type of cell
7 weeks ago by ATpoint 82k
1
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1
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278
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Comment: Comment: Is it possible to see so little adipocyte in white adipose tissue?
updated 7 weeks ago by 43k • written 7 weeks ago by 82k
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0
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279
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Comment: Comment: Deseq generating warning "the model matrix is not full rank"
7 weeks ago by ATpoint 82k
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1
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275
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Answer: Answer: Using velocyto on 3'UTR 10x single-cell RNA-Seq data
7 weeks ago by ATpoint 82k
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1
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274
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Comment: Comment: how to run limma for large datasets
7 weeks ago by ATpoint 82k
1
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0
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250
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Answer: Answer: Can I use this community for software development?
8 weeks ago by ATpoint 82k
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0
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609
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Answer: Answer: calculating mean fragment length from CollectInsertSizeMetrics(Picard) output
8 weeks ago by ATpoint 82k
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1
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551
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Comment: Comment: Quest about the input data for PCA analysis
8 weeks ago by ATpoint 82k
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198
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Comment: Comment: Adding gene to GRange objects with single base
8 weeks ago by ATpoint 82k
2
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259
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Comment: Comment: Disease Prevalence Database/Disease Incidence Database
8 weeks ago by ATpoint 82k
9,733 results • Page 3 of 195
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