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Answer: Answer: scRNAseq normalization
9 weeks ago by ATpoint 82k
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305
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Answer: Answer: Compute p-value, having log fold change
9 weeks ago by ATpoint 82k
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866
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Answer: Answer: t-test in two groups, multiple rows
9 weeks ago by ATpoint 82k
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406
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Answer: Answer: With DESeq2 "Not full rank" Error with design
9 weeks ago by ATpoint 82k
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251
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Answer: Answer: Seeking Advice on Pre-processing Single Cell Data for Gene Mapping
9 weeks ago by ATpoint 82k
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290
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Answer: Answer: GENERAL R QUESTION: Accessing package versions of an old R object/project?
9 weeks ago by ATpoint 82k
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401
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Answer: Answer: Demonstrating lack of difference between two peaksets
10 weeks ago by ATpoint 82k
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264
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Answer: Answer: Having problems doing the Hisat2 alignment
10 weeks ago by ATpoint 82k
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396
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Answer: Answer: p-value on excel for different number of mutant samples vs WT samples
10 weeks ago by ATpoint 82k
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333
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Answer: Answer: Deal with the mapping problem for deviding bins
11 weeks ago by ATpoint 82k
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1
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555
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Answer: Answer: Salmon
11 weeks ago by ATpoint 82k
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1
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614
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Answer: Answer: minimap2 gets killed, but it doesn't explain why
11 weeks ago by ATpoint 82k
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403
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Answer: Answer: Choosing right GSEA background gene sets
11 weeks ago by ATpoint 82k
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293
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Answer: Answer: DESEQ2 Code
11 weeks ago by ATpoint 82k
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329
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Answer: Answer: A question about using HISAT2 without biological replicates
12 weeks ago by ATpoint 82k
4
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362
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Answer: Answer: samtools faidx not finding my modified sequence
12 weeks ago by ATpoint 82k
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236
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Answer: Answer: Extract single chromosome reads from Bam file
3 months ago by ATpoint 82k
2
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1
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370
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Answer: Answer: model.matrix in EdgeR to account for batch effects with multiple samples
3 months ago by ATpoint 82k
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363
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Answer: Answer: Normalization of BIg wig file
3 months ago by ATpoint 82k
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416
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Answer: Answer: Difference in count values depends on tool and reference genome version
3 months ago by ATpoint 82k
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299
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Answer: Answer: Linux dependencies in Docker file
3 months ago by ATpoint 82k
2
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1
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584
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Answer: Answer: How do I use md5sum to check if my .fastq files from SRA Explorer have been down
3 months ago by ATpoint 82k
2
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1
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376
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Answer: Answer: scRNA-seq downstream analysis on raw vs batch corrected counts
3 months ago by ATpoint 82k
4
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2
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624
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Answer: Answer: Three fastq files
3 months ago by ATpoint 82k
2
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1
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625
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Answer: Answer: A lot of unknown/weird gene names after alignment with cellranger or starsolo
3 months ago by ATpoint 82k
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1
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419
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Answer: Answer: Differential expression analysis of lncRNA
3 months ago by ATpoint 82k
2
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0
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282
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Answer: Answer: Optimal MACS2/3 configuration for paired-end ChIP-seq data: `-f BAM` versus `-f
3 months ago by ATpoint 82k
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270
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Answer: Answer: DESeq2 and Gene Set Enrichment Analysis
3 months ago by ATpoint 82k
3
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513
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Answer: Answer: Trouble with samtools view not filtering specified regions of bam file
3 months ago by ATpoint 82k
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1
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620
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Answer: Answer: sam file error
4 months ago by ATpoint 82k
2
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0
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337
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Answer: Answer: will the features.tsv file from 10X chromium be same for all donor individuals?
4 months ago by ATpoint 82k
2
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540
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Answer: Answer: FASTQ-DUMP error while downloading HGDP datadset
4 months ago by ATpoint 82k
2
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0
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779
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Answer: Answer: where to work as a bioinformatician (NGS/IA)
4 months ago by ATpoint 82k
2
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298
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Answer: Answer: RNA-seq DE analysis: repeated measures design (options available, mixed models?)
4 months ago by ATpoint 82k
2
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0
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341
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Answer: Answer: Input for Deseq2 for downstream analysis
4 months ago by ATpoint 82k
2
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0
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253
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Answer: Answer: How to interpret Per sequence GC content in FastQC for ChIP-seq data?
4 months ago by ATpoint 82k
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1
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616
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Answer: Answer: problem with importing mtx file in scanpy
4 months ago by ATpoint 82k
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2
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797
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Answer: Answer: DESeq2 heatmap with low baseMean values
4 months ago by ATpoint 82k
1
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2
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945
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Answer: Answer: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
4 months ago by ATpoint 82k
0
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1
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570
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Answer: Answer: Difference between clipping and without clipping in Fastq-dump
4 months ago by ATpoint 82k
2
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1
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521
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Answer: Answer: Method of combining replicate data for signal track visualization
4 months ago by ATpoint 82k
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1
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553
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Answer: Answer: Indexing error using Salmon
4 months ago by ATpoint 82k
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0
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805
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Answer: Answer: Reference genome, BWA and right algorithm
4 months ago by ATpoint 82k
2
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0
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544
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Answer: Answer: Best way to look for gene signature in RNA-seq dataset
4 months ago by ATpoint 82k
1
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1
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668
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Answer: Answer: zika virus effect
4 months ago by ATpoint 82k
3
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1
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786
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Answer: Answer: sc-RNA seq DATA
4 months ago by ATpoint 82k
1
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1
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620
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Answer: Answer: How can I normalize miRNA read count from TCGA
4 months ago by ATpoint 82k
1
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1
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885
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Answer: Answer: Inquiry Regarding Cutoff for Survival Analysis
4 months ago by ATpoint 82k
4
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1
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576
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Answer: Answer: My paired end data became single end data after mapping
5 months ago by ATpoint 82k
2
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0
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476
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Answer: Answer: FastQC report
5 months ago by ATpoint 82k
2,330 results • Page 2 of 47
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