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Comment: Comment: Questions about transfering wgs file to reference genome file
21 days ago by ATpoint 82k
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2.4k
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Comment: Comment: Shannon vs Simpson for TCR diversity estimation
21 days ago by ATpoint 82k
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1
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340
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Comment: Comment: 10x GEX and ADT data analysis in Seurat
21 days ago by ATpoint 82k
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179
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Answer: Answer: Shared pathways up in disease blood and tissue relative to healthy blood (scRNA-
22 days ago by ATpoint 82k
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1
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1.2k
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Comment: Comment: ¿How I know if it is a batch effect or are real differences between my controls
26 days ago by ATpoint 82k
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391
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Comment: Comment: lncRNA from TCGA
26 days ago by ATpoint 82k
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1
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368
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Comment: Comment: WGCNA website
26 days ago by ATpoint 82k
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0
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230
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Comment: Comment: TMM normalization with DESeq2
4 weeks ago by ATpoint 82k
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1
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230
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Answer: Answer: TMM normalization with DESeq2
updated 4 weeks ago by 43k • written 4 weeks ago by 82k
1
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0
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184
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Comment: Comment: Batch effect issue in RNA velocity analysis
4 weeks ago by ATpoint 82k
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1
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380
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Comment: Comment: Single cell analysis with "meta".tsv.gz file
4 weeks ago by ATpoint 82k
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0
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386
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Comment: Comment: Homer giving troubles
4 weeks ago by ATpoint 82k
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2
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268
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Comment: Comment: P-value Threshold Consideration in Multi-Sample RNA-Seq Experiment
4 weeks ago by ATpoint 82k
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0
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268
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Comment: Comment: can't download and use mageck-vispr for R?
4 weeks ago by ATpoint 82k
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0
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191
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Answer: Answer: Can't download txdbmaker package
4 weeks ago by ATpoint 82k
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0
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509
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Comment: Comment: Installing Cell Ranger
4 weeks ago by ATpoint 82k
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0
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258
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Comment: Comment: What are crucial apps/ scripts for cancer genome/data analysis that can be set
4 weeks ago by ATpoint 82k
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1
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297
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Comment: Comment: Removing batch effect using combat-seq
4 weeks ago by ATpoint 82k
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1
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509
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Comment: Comment: Installing Cell Ranger
4 weeks ago by ATpoint 82k
1
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1
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297
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Comment: Comment: Removing batch effect using combat-seq
4 weeks ago by ATpoint 82k
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1
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386
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Answer: Answer: Homer giving troubles
4 weeks ago by ATpoint 82k
4
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0
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307
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Answer: Answer: Seeking Proper Interpretation of Dispersion Graph: A Call for Statistical and Bi
4 weeks ago by ATpoint 82k
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0
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424
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Comment: Comment: Problem generating paired end reads when converting Cell Ranger's BAM result to
4 weeks ago by ATpoint 82k
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0
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268
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Answer: Answer: How to calculate depth of coverage and applying read depth filter
4 weeks ago by ATpoint 82k
2
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1
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424
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Answer: Answer: Problem generating paired end reads when converting Cell Ranger's BAM result to
4 weeks ago by ATpoint 82k
3
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1
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273
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Comment: Comment: Gene reads all zero for each sample
5 weeks ago by ATpoint 82k
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0
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244
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Comment: Comment: Flow Cytometry Data Analysis by Seurat
5 weeks ago by ATpoint 82k
3
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1
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343
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Comment: Comment: Volcano Plot Output Inquiry: Graphs Facing Down
5 weeks ago by ATpoint 82k
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1
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11k
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Comment: Comment: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
5 weeks ago by ATpoint 82k
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1
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653
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Comment: Comment: Piping samtools to R
5 weeks ago by ATpoint 82k
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1
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653
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Comment: Comment: Piping samtools to R
5 weeks ago by ATpoint 82k
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1
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223
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Comment: Comment: Error with goodSamplesGenes()
5 weeks ago by ATpoint 82k
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1
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426
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Answer: Answer: Limma compare between 3 conditions vs 2 conditions
5 weeks ago by ATpoint 82k
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1
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451
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Comment: Comment: Salmon Quantification in Alignment based-mode
5 weeks ago by ATpoint 82k
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2
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277
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Comment: Comment: High number of detected genes per cell after doublet removal - scRNAseq data
5 weeks ago by ATpoint 82k
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1
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258
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Comment: Comment: Cell communacations analysis. I only have the proteome of one type of cell
5 weeks ago by ATpoint 82k
1
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1
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269
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Comment: Comment: Is it possible to see so little adipocyte in white adipose tissue?
updated 5 weeks ago by 43k • written 5 weeks ago by 82k
1
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0
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268
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Comment: Comment: Deseq generating warning "the model matrix is not full rank"
5 weeks ago by ATpoint 82k
0
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1
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255
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Answer: Answer: Using velocyto on 3'UTR 10x single-cell RNA-Seq data
5 weeks ago by ATpoint 82k
0
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1
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257
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Comment: Comment: how to run limma for large datasets
5 weeks ago by ATpoint 82k
1
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0
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225
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Answer: Answer: Can I use this community for software development?
5 weeks ago by ATpoint 82k
0
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0
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582
views
Answer: Answer: calculating mean fragment length from CollectInsertSizeMetrics(Picard) output
6 weeks ago by ATpoint 82k
1
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1
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528
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Comment: Comment: Quest about the input data for PCA analysis
6 weeks ago by ATpoint 82k
0
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0
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189
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Comment: Comment: Adding gene to GRange objects with single base
6 weeks ago by ATpoint 82k
2
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0
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249
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Comment: Comment: Disease Prevalence Database/Disease Incidence Database
6 weeks ago by ATpoint 82k
2
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1
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304
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Answer: Answer: How to visualize scRNA-seq normalized data
6 weeks ago by ATpoint 82k
2
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1
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265
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Answer: Answer: Infering the cell composition from bulk RNA-seq data for mouse
6 weeks ago by ATpoint 82k
0
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1
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243
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Answer: Answer: Gene set to perform GSVA
6 weeks ago by ATpoint 82k
1
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1
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325
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Answer: Answer: Length by gene from salmon
6 weeks ago by ATpoint 82k
1
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1
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600
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Comment: Comment: Applicability of the SoupX ambient mRNA decontamination technique to fixed and/o
6 weeks ago by ATpoint 82k
9,678 results • Page 2 of 194
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