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Answer: Answer: DSEQ2 analysis
19 minutes ago by ATpoint 82k
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154
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Answer: Answer: What analysis suitable to identify similarly expressed genes between two samples
21 hours ago by ATpoint 82k
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184
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Answer: Answer: MA plot of shrunken fold change
3 days ago by ATpoint 82k
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291
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Answer: Answer: High Malat-1 expression in single cell data
3 days ago by ATpoint 82k
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290
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Answer: Answer: ChIP-seq datasets: input samples omitted?
4 days ago by ATpoint 82k
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360
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Answer: Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
6 days ago by ATpoint 82k
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303
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Answer: Answer: Sequence read length shorter than flow cell specification
7 days ago by ATpoint 82k
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285
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Answer: Answer: Gene set enrichment analysis differences between 2020 and 2024
10 days ago by ATpoint 82k
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344
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Answer: Answer: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
10 days ago by ATpoint 82k
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303
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Answer: Answer: Per base sequence content error in RNAseq analysis
11 days ago by ATpoint 82k
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569
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Answer: Answer: how to find genes that are significantly expressed in brain cortex samples
12 days ago by ATpoint 82k
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293
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Answer: Answer: DEseq2
14 days ago by ATpoint 82k
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396
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Answer: Answer: Which experiments generate Position Frequency Matrix?
17 days ago by ATpoint 82k
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406
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Answer: Answer: I am new to single cell analysis. Can RNA velocity (spliced/unspliced) be calcul
17 days ago by ATpoint 82k
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349
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Answer: Answer: I'm new to cell ranger. Can single cells prepared with a protocol other than the
17 days ago by ATpoint 82k
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412
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Answer: Answer: Deseq2 : Paired analysis or otherwise
19 days ago by ATpoint 82k
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271
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Answer: Answer: How to handle more than 1 SRA Run per Experiment?
20 days ago by ATpoint 82k
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179
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Answer: Answer: Shared pathways up in disease blood and tissue relative to healthy blood (scRNA-
22 days ago by ATpoint 82k
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230
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Answer: Answer: TMM normalization with DESeq2
updated 4 weeks ago by 43k • written 4 weeks ago by 82k
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192
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Answer: Answer: Can't download txdbmaker package
4 weeks ago by ATpoint 82k
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387
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Answer: Answer: Homer giving troubles
4 weeks ago by ATpoint 82k
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308
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Answer: Answer: Seeking Proper Interpretation of Dispersion Graph: A Call for Statistical and Bi
4 weeks ago by ATpoint 82k
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268
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Answer: Answer: How to calculate depth of coverage and applying read depth filter
4 weeks ago by ATpoint 82k
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424
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Answer: Answer: Problem generating paired end reads when converting Cell Ranger's BAM result to
4 weeks ago by ATpoint 82k
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426
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Answer: Answer: Limma compare between 3 conditions vs 2 conditions
5 weeks ago by ATpoint 82k
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255
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Answer: Answer: Using velocyto on 3'UTR 10x single-cell RNA-Seq data
5 weeks ago by ATpoint 82k
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225
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Answer: Answer: Can I use this community for software development?
5 weeks ago by ATpoint 82k
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582
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Answer: Answer: calculating mean fragment length from CollectInsertSizeMetrics(Picard) output
6 weeks ago by ATpoint 82k
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304
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Answer: Answer: How to visualize scRNA-seq normalized data
6 weeks ago by ATpoint 82k
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265
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Answer: Answer: Infering the cell composition from bulk RNA-seq data for mouse
6 weeks ago by ATpoint 82k
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243
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Answer: Answer: Gene set to perform GSVA
6 weeks ago by ATpoint 82k
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325
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Answer: Answer: Length by gene from salmon
6 weeks ago by ATpoint 82k
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396
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Answer: Answer: scRNAseq normalization
6 weeks ago by ATpoint 82k
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281
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Answer: Answer: Compute p-value, having log fold change
6 weeks ago by ATpoint 82k
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817
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Answer: Answer: t-test in two groups, multiple rows
6 weeks ago by ATpoint 82k
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389
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Answer: Answer: With DESeq2 "Not full rank" Error with design
6 weeks ago by ATpoint 82k
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239
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Answer: Answer: Seeking Advice on Pre-processing Single Cell Data for Gene Mapping
6 weeks ago by ATpoint 82k
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254
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Answer: Answer: GENERAL R QUESTION: Accessing package versions of an old R object/project?
7 weeks ago by ATpoint 82k
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374
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Answer: Answer: Demonstrating lack of difference between two peaksets
7 weeks ago by ATpoint 82k
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237
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Answer: Answer: Having problems doing the Hisat2 alignment
7 weeks ago by ATpoint 82k
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368
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Answer: Answer: p-value on excel for different number of mutant samples vs WT samples
8 weeks ago by ATpoint 82k
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319
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Answer: Answer: Deal with the mapping problem for deviding bins
8 weeks ago by ATpoint 82k
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514
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Answer: Answer: Salmon
8 weeks ago by ATpoint 82k
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538
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Answer: Answer: minimap2 gets killed, but it doesn't explain why
8 weeks ago by ATpoint 82k
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0
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362
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Answer: Answer: Choosing right GSEA background gene sets
9 weeks ago by ATpoint 82k
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0
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279
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Answer: Answer: DESEQ2 Code
9 weeks ago by ATpoint 82k
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1
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295
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Answer: Answer: A question about using HISAT2 without biological replicates
9 weeks ago by ATpoint 82k
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333
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Answer: Answer: samtools faidx not finding my modified sequence
10 weeks ago by ATpoint 82k
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0
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227
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Answer: Answer: Extract single chromosome reads from Bam file
10 weeks ago by ATpoint 82k
2
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1
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349
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Answer: Answer: model.matrix in EdgeR to account for batch effects with multiple samples
10 weeks ago by ATpoint 82k
2,312 results • Page 1 of 47
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