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questions
6
votes
8
replies
23k
views
Get gene length with R
R
updated 20 months ago by
aUser
▴ 30 • written 6.0 years ago by
user31888
▴ 130
6
votes
6
replies
6.5k
views
What batch correction was applied to pan-Cancer mRNA expression data?
TCGA
pan-Cancer Atlas
mRNA
normalisation
updated 3.2 years ago by
chengdu_1982
• 0 • written 5.4 years ago by
user31888
▴ 130
4
votes
11
replies
4.3k
views
Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down"
TCGA
TCGAbiolinks
GenomicDataCommons
updated 3.3 years ago by
1830416019
• 0 • written 5.8 years ago by
user31888
▴ 130
1
vote
3
replies
1.9k
views
How to read a gzipped VCF file from a R connection
R
vcf
3.4 years ago by
user31888
▴ 130
1
vote
3
replies
2.5k
views
Comparing two differential expression experiments
differential expression
DESeq
updated 3.6 years ago by
Biostar
20 • written 7.2 years ago by
user31888
▴ 130
3
votes
11
replies
3.0k
views
Issues installing bcftools with GNU Scientific Library
bcftools
zlib
updated 4.8 years ago by
ATpoint
82k • written 4.8 years ago by
user31888
▴ 130
1
vote
15
replies
2.8k
views
Copy Number Analysis on single file
CNV
updated 4.8 years ago by
Kevin Blighe
88k • written 4.8 years ago by
user31888
▴ 130
9
votes
8
replies
2.2k
views
Divergent number of replicates between FastQC and samtools
fastqc
STAR
samtools
updated 5.0 years ago by
i.sudbery
19k • written 5.0 years ago by
user31888
▴ 130
0
votes
4
replies
1.2k
views
Normalisation of reference dataset for scRNA cell type annotation
scRNA
scmap
cell type
Human Primary Cell Atlas
5.0 years ago by
user31888
▴ 130
2
votes
10
replies
3.3k
views
Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
single cell
demultiplexing
5.1 years ago by
user31888
▴ 130
1
vote
3
replies
7.6k
views
How to normalize median-center log-transform an expression matrix
R
RNA-Seq
5.4 years ago by
user31888
▴ 130
0
votes
7
replies
2.0k
views
Convert GDCResults object (nested lists) to a human readable data frame
GenomicDataCommon
R
list
data frame
5.8 years ago by
user31888
▴ 130
3
votes
4
replies
2.7k
views
featureCount vs GENCODE gene lengths
featureCount
GENCODE
updated 5.8 years ago by
Emily
23k • written 5.8 years ago by
user31888
▴ 130
0
votes
1
reply
5.6k
views
strand bias filtering with bcftools
bcftools
samtools
Phred
updated 6.3 years ago by
Kevin Blighe
88k • written 7.1 years ago by
user31888
▴ 130
2
votes
4
replies
6.7k
views
Alternative splicing: explanation about delta psi values
MISO
alternative splicing
psi
updated 6.6 years ago by
Kristoffer Vitting-Seerup
★ 4.1k • written 6.6 years ago by
user31888
▴ 130
0
votes
1
reply
2.6k
views
Precision of loss of heterozygosity detection with Sanger sequencing vs copy number analysis
LOH
CNV
Sanger Sequencing
updated 6.6 years ago by
Eric T.
★ 2.8k • written 6.6 years ago by
user31888
▴ 130
0
votes
4
replies
2.0k
views
Program to validate NGS variants from Sanger sequencing
NGS
Sanger
Validation
6.7 years ago by
user31888
▴ 130
4
votes
7
replies
1.2k
views
Does a database of pathogenic transcripts exist?
RNA-Seq
database
updated 6.8 years ago by
h.mon
35k • written 6.8 years ago by
user31888
▴ 130
0
votes
5
replies
1.9k
views
Inverted base and amino acid change in Annovar
annovar
6.9 years ago by
user31888
▴ 130
7
votes
9
replies
11k
views
R: converting Ensembl row names to Symbol ID outputs missing values in 'row.names' are not allowed
R
updated 7.2 years ago by
Liun
▴ 30 • written 7.2 years ago by
user31888
▴ 130
0
votes
3
replies
4.1k
views
GATK SPlitNCigarReads memory issue
GATK
SplitNCigarReads
7.3 years ago by
user31888
▴ 130
0
votes
3
replies
1.6k
views
Allele with high population frequency also tagged as pathogenic
Allele Frequency
Pathogenecity
7.5 years ago by
user31888
▴ 130
1
vote
2
replies
3.6k
views
bam-readcount installation problem: Linking CXX executable
bam-readcount
7.9 years ago by
user31888
▴ 130
3
votes
3
replies
4.5k
views
GATK DepthOfCoverage: 'total coverage' and 'mean coverage' meaning
GATK
DepthOfCoverage
updated 3.0 years ago by
kanika.151
▴ 130 • written 8.1 years ago by
user31888
▴ 130
0
votes
0
replies
2.1k
views
Picard ExtractIlluminaBarcodes: BARCODE-FILE
picard
8.1 years ago by
user31888
▴ 130
0
votes
5
replies
2.2k
views
Rna-Seq alternative splicing analysis under limited conditions: possible?
alternative-splicing
updated 21 months ago by
Ram
43k • written 8.5 years ago by
user31888
▴ 130
6
votes
5
replies
4.7k
views
Doc/tutorial UCSC MySQL
mysql
UCSC-genome-browser
updated 21 months ago by
Ram
43k • written 8.4 years ago by
user31888
▴ 130
0
votes
0
replies
1.7k
views
Retrieving gene name from its localisation in a .gff3 annotation file.
gene
UCSC
annotation
updated 21 months ago by
Ram
43k • written 8.5 years ago by
user31888
▴ 130
0
votes
0
replies
3.5k
views
GAGE pathway analysis (R/Bioconductor): summarizeOverlaps error
RNA-Seq
R
Bioconductor
GAGE
updated 21 months ago by
Ram
43k • written 8.5 years ago by
user31888
▴ 130
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