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Answer: Answer: Official/centralized/designated genetic/biological knowledge graph?
2.5 years ago by Carlo Yague 8.7k
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1.1k
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Answer: Answer: Gene list for GO enrichment after DESeq2. Should I use a gene list of differenti
2.5 years ago by Carlo Yague 8.7k
2
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1
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1.7k
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Answer: Answer: collapseReplicates in DESeq2 when the number of technical replicates per biosamp
2.5 years ago by Carlo Yague 8.7k
3
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1.1k
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Answer: Answer: Clarification request isoforms, redundancy, ortholog, paralog , divergence , con
2.5 years ago by Carlo Yague 8.7k
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1
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959
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Answer: Answer: Transcript assemblers from RNA-seq reads - a request for tool recommendation
2.6 years ago by Carlo Yague 8.7k
3
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1
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5.6k
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Answer: Answer: Samfiles
2.6 years ago by Carlo Yague 8.7k
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1.6k
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Answer: Answer: calculate nucleotides frequencies from mapped reads in a BAM file
2.6 years ago by Carlo Yague 8.7k
2
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0
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924
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Answer: Answer: How should I deal with my RNAseq result with high % of mutiple aligned reads?
2.6 years ago by Carlo Yague 8.7k
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1
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1.9k
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Answer: Answer: why those reads don't contain 0x2
2.6 years ago by Carlo Yague 8.7k
2
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0
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624
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Answer: Answer: Consensus on poly-a selected lncRNAs for differential expression analysis
2.6 years ago by Carlo Yague 8.7k
2
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2
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1.4k
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Answer: Answer: bowtie2 mapping qualities of 0
9 months ago by Carlo Yague 8.7k
2
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1
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2.0k
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Answer: Answer: Best tools for miRNA target prediction
2.6 years ago by Carlo Yague 8.7k
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1.4k
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Answer: Answer: Using HTSeq-count for paired-end data but unsorted by SAMTOOLS
2.6 years ago by Carlo Yague 8.7k
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1
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1.4k
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Answer: Answer: How to get the coverage information in chip seq for TSS and genebody
2.7 years ago by Carlo Yague 8.7k
2
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0
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883
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Answer: Answer: Is it a good idea to plot a volcano plot starting at position x =1
2.7 years ago by Carlo Yague 8.7k
3
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1
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1.3k
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Answer: Answer: Is removing strand information when obtaining intergenic regions from GRanges ne
2.7 years ago by Carlo Yague 8.7k
2
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1
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1.7k
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Answer: Answer: Download bigWig files of publicly available ChIP-seq samples
2.7 years ago by Carlo Yague 8.7k
2
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0
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3.5k
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Answer: Answer: From amino acid sequence to DNA sequence using Reverse Translate software
2.7 years ago by Carlo Yague 8.7k
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1
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1.8k
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Answer: Answer: same padj for all the genes after DEseq analysis
2.8 years ago by Carlo Yague 8.7k
1
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1
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970
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Answer: Answer: RNASEQ differential expression of paired samples
updated 2.8 years ago by 82k • written 2.8 years ago by 8.7k
2
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1
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2.4k
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Answer: Answer: the --fraction option of featureCounts
2.8 years ago by Carlo Yague 8.7k
3
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0
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1.2k
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Answer: Answer: Orthology, sequence similarity, and conservation of function
2.8 years ago by Carlo Yague 8.7k
3
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1
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1.1k
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Answer: Answer: DESeq2 - design matrix and interaction terms
2.8 years ago by Carlo Yague 8.7k
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1
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1.4k
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Answer: Answer: Interpretation of DESeq2 DE-analysis
2.8 years ago by Carlo Yague 8.7k
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0
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624
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Answer: Answer: Low similarity gene alignment
2.8 years ago by Carlo Yague 8.7k
4
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1
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2.8k
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Answer: Answer: Visualiation of samtools depth output in a plot
2.8 years ago by Carlo Yague 8.7k
4
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1
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954
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Answer: Answer: FeatureCounts dont read all features
2.8 years ago by Carlo Yague 8.7k
0
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1
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878
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Answer: Answer: How can I drop the MAPQ info of my sam/bam file?
3.0 years ago by Carlo Yague 8.7k
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0
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1.9k
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Answer: Answer: deeptools 3.5 plotCorrelation
3.0 years ago by Carlo Yague 8.7k
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0
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554
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Answer: Answer: RNA-seq: extraction and annotation of differentially expressed genes
3.0 years ago by Carlo Yague 8.7k
4
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1
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3.8k
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Answer: Answer: Help with rownames in DESeq2
3.0 years ago by Carlo Yague 8.7k
2
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1
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3.6k
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Answer: Answer: How to distinguish orthologs from paralogs?
3.0 years ago by Carlo Yague 8.7k
1
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1
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1.8k
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Answer: Answer: Only one gene is upregulated?
3.0 years ago by Carlo Yague 8.7k
2
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0
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618
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Answer: Answer: From which genome assembly do these coordinates come?
3.0 years ago by Carlo Yague 8.7k
0
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0
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1.1k
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Answer: Answer: How to Align multiple short reads (NGS data) to a short (~200bp) reference?
3.0 years ago by Carlo Yague 8.7k
6
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0
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3.2k
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Answer: Answer: How to Write Loop For Trimming Every FastQ File Individually
3.0 years ago by Carlo Yague 8.7k
0
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1
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2.5k
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Answer: Answer: different sequencing depths for Input and IP in ChIP-Seq
3.0 years ago by Carlo Yague 8.7k
5
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3
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3.7k
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Answer: Answer: DESeq2 design for two variables and pairwise comparisons
3.0 years ago by Carlo Yague 8.7k
3
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0
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657
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Answer: Answer: Is it bad practice to change threshold for interaction probability?
3.1 years ago by Carlo Yague 8.7k
0
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1
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2.0k
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Answer: Answer: Quantification of stranded RNA-seq data
3.1 years ago by Carlo Yague 8.7k
1
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0
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519
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Answer: A: Batch-correction of partially confounded RNA-seq data
3.2 years ago by Carlo Yague 8.7k
1
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1
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7.3k
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Answer: A: scatter plot, aov()
3.2 years ago by Carlo Yague 8.7k
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2
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6.4k
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Answer: C: Samtools command not found
3.2 years ago by Carlo Yague 8.7k
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1
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929
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Answer: A: DESeq multiple factor question
3.2 years ago by Carlo Yague 8.7k
2
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0
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1.0k
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Answer: A: Is it necessary to test for multiple correction during differential expression a
3.2 years ago by Carlo Yague 8.7k
3
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1
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1.0k
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Answer: A: Merging chip-seq samples sequenced in two different runs
3.2 years ago by Carlo Yague 8.7k
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0
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2.7k
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Answer: A: featureCounts paired end mode
3.3 years ago by Carlo Yague 8.7k
0
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0
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620
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Answer: A: Regarding tophat output
3.3 years ago by Carlo Yague 8.7k
4
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1
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1.2k
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Answer: A: Read counts generated from featureCounts
3.3 years ago by Carlo Yague 8.7k
2
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1
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3.9k
views
Answer: A: bowtie2 --un vs --un-conc
3.3 years ago by Carlo Yague 8.7k
324 results • Page 2 of 7
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