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Showing :
answers
1
vote
1
reply
5.2k
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Answer:
A: Cancer cell line WGS
updated 4.5 years ago by
Ram
43k • written 8.7 years ago by
alolex
▴ 950
2
votes
0
replies
16k
views
Answer:
A: What Do You Waste Your Time On
updated 4.5 years ago by
Ram
43k • written 8.8 years ago by
alolex
▴ 950
1
vote
1
reply
2.2k
views
Answer:
Answer: Interpretation of DE gene and mutation in normal/cancer sample
updated 16 months ago by
Ram
43k • written 8.9 years ago by
alolex
▴ 950
0
votes
0
replies
2.5k
views
Answer:
Answer: Needed appropriate journal to submit my paper
updated 18 months ago by
Ram
43k • written 8.7 years ago by
alolex
▴ 950
1
vote
0
replies
2.9k
views
Answer:
Answer: Draw multiple heatmaps
updated 18 months ago by
Ram
43k • written 8.8 years ago by
alolex
▴ 950
1
vote
0
replies
2.4k
views
Answer:
Answer: How to filter genes by gene size
updated 18 months ago by
Ram
43k • written 8.8 years ago by
alolex
▴ 950
6
votes
2
replies
4.8k
views
Answer:
Answer: Why is DESeq a better method for finding highly upregulated and downregulated ge
updated 18 months ago by
Ram
43k • written 8.8 years ago by
alolex
▴ 950
0
votes
0
replies
13k
views
Answer:
Answer: Calculate FPKM value from bam files
updated 18 months ago by
Ram
43k • written 8.8 years ago by
alolex
▴ 950
2
votes
0
replies
2.4k
views
Answer:
Answer: Methylation scores from TCGA
updated 18 months ago by
Ram
43k • written 8.8 years ago by
alolex
▴ 950
3
votes
0
replies
2.0k
views
Answer:
Answer: Gene Identifiers and Databases
updated 18 months ago by
Ram
43k • written 8.8 years ago by
alolex
▴ 950
1
vote
1
reply
5.3k
views
Answer:
Answer: Pdb file help: renumber residue manually
updated 18 months ago by
Ram
43k • written 8.8 years ago by
alolex
▴ 950
1
vote
1
reply
2.6k
views
Answer:
Answer: having a more informative annotation file
updated 18 months ago by
Ram
43k • written 8.8 years ago by
alolex
▴ 950
0
votes
0
replies
3.7k
views
Answer:
Answer: TCGA gene expression
updated 17 months ago by
Ram
43k • written 8.8 years ago by
alolex
▴ 950
1
vote
1
reply
3.4k
views
Answer:
Answer: DESeq pvalue>0.05 qvalue=1
updated 17 months ago by
Ram
43k • written 8.8 years ago by
alolex
▴ 950
0
votes
0
replies
4.7k
views
Answer:
Answer: How to download a data matrix of gene expression data from TCGA ?
updated 17 months ago by
Ram
43k • written 8.8 years ago by
alolex
▴ 950
1
vote
0
replies
5.0k
views
Answer:
Answer: Unequal number of technical and biological replicates per sample for RNA-Seq exp
updated 17 months ago by
Ram
43k • written 8.8 years ago by
alolex
▴ 950
1
vote
0
replies
1.9k
views
Answer:
Answer: Microarray Annotation problems
updated 17 months ago by
Ram
43k • written 8.8 years ago by
alolex
▴ 950
3
votes
0
replies
7.7k
views
Answer:
Answer: To get genes for each clusters from heatmap
updated 17 months ago by
Ram
43k • written 8.8 years ago by
alolex
▴ 950
2
votes
1
reply
1.7k
views
Answer:
Answer: coloring specific mRNA in IGB
updated 17 months ago by
Ram
43k • written 8.8 years ago by
alolex
▴ 950
0
votes
1
reply
2.5k
views
Answer:
A: Alternatives to TCGA and ICGC? Especially for hindbrain and pediatric brain canc
8.8 years ago by
alolex
▴ 950
1
vote
1
reply
5.9k
views
Answer:
Answer: How to obtain side chain atoms from PDB file?
updated 16 months ago by
Ram
43k • written 8.9 years ago by
alolex
▴ 950
2
votes
1
reply
2.7k
views
Answer:
Answer: Extracting mRNA and protein Data from NCBI
updated 16 months ago by
Ram
43k • written 8.9 years ago by
alolex
▴ 950
1
vote
2
replies
5.2k
views
Answer:
Answer: ttest on a list in R
updated 16 months ago by
Ram
43k • written 8.9 years ago by
alolex
▴ 950
2
votes
0
replies
7.8k
views
Answer:
Answer: Clustering sequence on similarity using percentage identity matrix
updated 16 months ago by
Ram
43k • written 8.9 years ago by
alolex
▴ 950
1
vote
0
replies
5.2k
views
Answer:
Answer: Viewing the tophat output (mapped.bam and junctions) along with genome coordinat
updated 16 months ago by
Ram
43k • written 8.9 years ago by
alolex
▴ 950
1
vote
0
replies
5.0k
views
Answer:
Answer: filtering out the genes in RNA-seq experiment
updated 16 months ago by
Ram
43k • written 8.9 years ago by
alolex
▴ 950
0
votes
0
replies
2.4k
views
Answer:
Answer: Suggested Undergraduate Courses to become a Bioinformatician
updated 16 months ago by
Ram
43k • written 8.9 years ago by
alolex
▴ 950
0
votes
0
replies
5.9k
views
Answer:
Answer: High correlation and classification
updated 16 months ago by
Ram
43k • written 8.9 years ago by
alolex
▴ 950
1
vote
0
replies
5.5k
views
Answer:
Answer: Ideal samtools view f/F flags
updated 16 months ago by
Ram
43k • written 8.9 years ago by
alolex
▴ 950
0
votes
2
replies
3.5k
views
Answer:
Answer: how to find differential genes using TCGA RPKM data
updated 16 months ago by
Ram
43k • written 8.9 years ago by
alolex
▴ 950
0
votes
0
replies
6.0k
views
Answer:
Answer: Making FASTA files
updated 16 months ago by
Ram
43k • written 8.9 years ago by
alolex
▴ 950
0
votes
1
reply
2.5k
views
Answer:
Answer: Map a protein domain information to a sequence
updated 16 months ago by
Ram
43k • written 8.9 years ago by
alolex
▴ 950
2
votes
1
reply
4.8k
views
Answer:
Answer: Extracting hierarchical clustering pattern of the genes from heatmap
updated 16 months ago by
Ram
43k • written 8.9 years ago by
alolex
▴ 950
0
votes
0
replies
2.3k
views
Answer:
Answer: Identifying repeated genes from multiple lists
updated 16 months ago by
Ram
43k • written 8.9 years ago by
alolex
▴ 950
2
votes
1
reply
3.0k
views
Answer:
Answer: retrieving probeset ID of a gene from affymetrix database or anywhere alse
updated 16 months ago by
Ram
43k • written 8.9 years ago by
alolex
▴ 950
0
votes
0
replies
4.0k
views
Answer:
Answer: How to compute scale bar of the dendrogram for heatmap using heatmap2 ?
updated 15 months ago by
Ram
43k • written 9.0 years ago by
alolex
▴ 950
1
vote
0
replies
5.5k
views
Answer:
Answer: How to get public cancer RNA-seq data?
updated 17 months ago by
Ram
43k • written 9.0 years ago by
alolex
▴ 950
9
votes
2
replies
13k
views
Answer:
Answer: How to work with Level 3 data (RPKM values) from TCGA database
updated 16 months ago by
Ram
43k • written 9.0 years ago by
alolex
▴ 950
3
votes
0
replies
3.0k
views
Answer:
Answer: scripting problem to change string match of one file to another
updated 15 months ago by
Ram
43k • written 9.0 years ago by
alolex
▴ 950
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