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1
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0
replies
2.8k
views
Answer: Answer: sequence extraction from multifast file using IDs in another text file
updated 18 months ago by 43k • written 8.8 years ago by 10k
0
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0
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30k
views
Answer: A: Filtering Fasta Sequences By Chromosomes Names From A Big Fasta File
updated 4.5 years ago by 43k • written 8.8 years ago by 10k
3
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0
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14k
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Answer: Answer: How to get length of selected contigs within a fasta file generated by transcrip
updated 16 months ago by 43k • written 8.8 years ago by 10k
0
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0
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2.6k
views
Answer: Answer: Masking Variable Sites in a Fasta File
updated 16 months ago by 43k • written 8.9 years ago by 10k
4
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0
replies
8.6k
views
Answer: A: extract sequences from multi fasta using partial ID
updated 4.6 years ago by 43k • written 9.3 years ago by 10k
3
votes
1
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37k
views
Answer: A: how to convert a long fasta-file into many separate single fasta sequences
updated 4.6 years ago by 43k • written 9.8 years ago by 10k
0
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1
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3.8k
views
Comment: C: [Error] getting fasta file from 1000genomes
updated 4.6 years ago by 43k • written 9.8 years ago by 10k
0
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0
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8.3k
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Comment: C: Not having root access sucks; installing software without root privileges
updated 4.6 years ago by 43k • written 9.9 years ago by 10k
6
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2
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8.3k
views
Answer: A: Not having root access sucks; installing software without root privileges
updated 4.6 years ago by 43k • written 9.9 years ago by 10k
2
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1
reply
3.1k
views
Answer: A: Bowtie2 allowing mismatches syntax issue
updated 4.6 years ago by 43k • written 10.0 years ago by 10k
2
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1
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5.4k
views
Comment: C: Samtools Have Trouble "View" Bwa Mem Result, But Good With Bwa Sampe Result?
updated 4.6 years ago by 43k • written 10.1 years ago by 10k
7
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1
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16k
views
Answer: A: Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
updated 4.6 years ago by 43k • written 10.2 years ago by 10k
0
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0
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16k
views
Comment: C: Sra Format Questions: How To Get A Sam File That Can Be Converted To Bam?
updated 4.6 years ago by 43k • written 10.2 years ago by 10k
3
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2
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6.4k
views
Answer: A: How To Prepare Gatk .Vcf Files Output For Annovar ?
updated 4.6 years ago by 43k • written 10.8 years ago by 10k
0
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0
replies
9.6k
views
Comment: C: Best Human Genome Reference File For Gatk?
updated 4.6 years ago by 43k • written 10.8 years ago by 10k
1
vote
1
reply
12k
views
Answer: A: Finding Out Adapters Information In Small Rna Seq Data
updated 4.6 years ago by 43k • written 11.4 years ago by 10k
4
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1
reply
4.8k
views
Answer: A: Vcf File With Variants And Genotypes For A "Single Individual"
updated 4.6 years ago by 43k • written 11.7 years ago by 10k
3
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0
replies
92k
views
Comment: C: How To Split One Big Sequence File Into Multiple Files With Less Than 1000 Seque
updated 4.6 years ago by 43k • written 8.7 years ago by 10k
0
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0
replies
74k
views
Comment: C: Extract User Defined Region From An Fasta File
updated 4.7 years ago by 43k • written 8.7 years ago by 10k
0
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1
reply
74k
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Comment: C: Extract User Defined Region From An Fasta File
updated 4.7 years ago by 43k • written 8.7 years ago by 10k
3
votes
1
reply
27k
views
Comment: C: Ibd (Identity By Descent) And The Chosen Value Of Pi_Hat
4.9 years ago by Matt Shirley 10k
24
votes
1
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42k
views
Answer: A: Get chromosome sizes from fasta file
updated 5.0 years ago by 43k • written 8.3 years ago by 10k
5
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1
reply
6.9k
views
Answer: A: Using parallel with Mem
updated 5.1 years ago by 87k • written 10.0 years ago by 10k
1
vote
0
replies
199k
views
Comment: C: Correct Way To Parse A Fasta File In Python
5.2 years ago by Matt Shirley 10k
3
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1
reply
199k
views
Comment: C: Correct Way To Parse A Fasta File In Python
5.2 years ago by Matt Shirley 10k
15
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0
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22k
views
Answer: A: Remove Vcf Header Lines
updated 5.2 years ago by 11k • written 11.8 years ago by 10k
0
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0
replies
4.5k
views
Comment: C: Get Random Alignments From Sam File
updated 5.3 years ago by 43k • written 10.6 years ago by 10k
0
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0
replies
4.5k
views
Comment: C: Get Random Alignments From Sam File
updated 5.3 years ago by 43k • written 10.6 years ago by 10k
2
votes
0
replies
3.5k
views
Comment: C: The "Rareness" Of Two Adjacent Nonsynonymous Mutations.
updated 5.3 years ago by 43k • written 11.6 years ago by 10k
0
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1
reply
3.5k
views
Comment: C: The "Rareness" Of Two Adjacent Nonsynonymous Mutations.
updated 5.3 years ago by 43k • written 11.6 years ago by 10k
5
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2
replies
13k
views
Answer: A: Is there a tool to transform GenomeStudio genotype format to VCF?
updated 5.4 years ago by 43k • written 9.9 years ago by 10k
1
vote
1
reply
2.1k
views
Comment: C: RNA seq - TMM values
5.5 years ago by Matt Shirley 10k
2
votes
1
reply
1.6k
views
Answer: A: Get sequences from a BAM file as strings spaced out as described by cigar
5.5 years ago by Matt Shirley 10k
87
votes
1
reply
180k
views
Answer: A: Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi
updated 5.6 years ago by 43k • written 11.4 years ago by 10k
43
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0
replies
70k
views
Answer: A: Sequence length from Fasta
updated 5.6 years ago by 43k • written 9.5 years ago by 10k
0
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0
replies
42k
views
Comment: C: Get chromosome sizes from fasta file
5.6 years ago by Matt Shirley 10k
0
votes
0
replies
3.7k
views
Comment: C: Sort Sequences In A Fasta File According To The peg List
updated 5.6 years ago by 43k • written 8.2 years ago by 10k
1
vote
1
reply
2.1k
views
Comment: C: Importing big sequences into Python
updated 5.6 years ago by 43k • written 8.2 years ago by 10k
1
vote
1
reply
2.9k
views
Comment: C: Retrieve the sequence based on the start and end position in the cuffmerged.gtf
updated 5.6 years ago by 43k • written 8.2 years ago by 10k
1
vote
0
replies
4.8k
views
Answer: A: Problem iterating through BAM file using pysam
updated 5.6 years ago by 43k • written 8.2 years ago by 10k
4
votes
0
replies
199k
views
Answer: Answer: Correct Way To Parse A Fasta File In Python
updated 5 months ago by 43k • written 9.8 years ago by 10k
0
votes
0
replies
199k
views
Comment: Comment: Correct Way To Parse A Fasta File In Python
updated 5 months ago by 43k • written 7.2 years ago by 10k
0
votes
0
replies
2.9k
views
Comment: C: is this a potential mosaicism?
5.7 years ago by Matt Shirley 10k
6
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2
replies
2.9k
views
Answer: A: is this a potential mosaicism?
5.7 years ago by Matt Shirley 10k
0
votes
0
replies
86k
views
Comment: C: How To Extract A Sequence From A Big (6Gb) Multifasta File ?
5.8 years ago by Matt Shirley 10k
5
votes
0
replies
36k
views
Comment: C: How Do I Convert Fa Files To Bed Format?
5.8 years ago by Matt Shirley 10k
0
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0
replies
27k
views
Comment: C: Converting Gvcf Files Into Vcf
6.1 years ago by Matt Shirley 10k
2
votes
1
reply
4.1k
views
Answer: A: How to use pysam to execute "samtools fastq xxx.sam>xxx.fastq"
6.1 years ago by Matt Shirley 10k
1
vote
0
replies
4.1k
views
Comment: C: How to use pysam to execute "samtools fastq xxx.sam>xxx.fastq"
6.1 years ago by Matt Shirley 10k
0
votes
0
replies
6.1k
views
Answer: A: Rename FASTA files according to FASTA file header
6.2 years ago by Matt Shirley 10k
696 results • Page 2 of 14
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