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Comment: Comment: Problem with Calling Variants from RNA-Seq data
5 days ago by i.sudbery 19k
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226
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Answer: Answer: Biomart issue, why so few 3'utrs?
6 days ago by i.sudbery 19k
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1
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226
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Comment: Comment: Biomart issue, why so few 3'utrs?
6 days ago by i.sudbery 19k
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0
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460
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Comment: Comment: UMI-Tools knee-method has great influence on the results of white list
10 days ago by i.sudbery 19k
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1
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460
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Comment: Comment: UMI-Tools knee-method has great influence on the results of white list
10 days ago by i.sudbery 19k
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0
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523
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Comment: Comment: featureCounts output summary assigned value higher than uniquely mapped reads fr
12 days ago by i.sudbery 19k
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1
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460
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Comment: Comment: UMI-Tools knee-method has great influence on the results of white list
13 days ago by i.sudbery 19k
1
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1
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460
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Comment: Comment: UMI-Tools knee-method has great influence on the results of white list
13 days ago by i.sudbery 19k
0
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1
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460
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Comment: Comment: UMI-Tools knee-method has great influence on the results of white list
13 days ago by i.sudbery 19k
1
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1
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421
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Answer: Answer: Understanding STAR output (Aligned.out.sam file)
14 days ago by i.sudbery 19k
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1
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440
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Comment: Comment: How does gene length effect the number of reads mapped
17 days ago by i.sudbery 19k
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2
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440
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Comment: Comment: How does gene length effect the number of reads mapped
17 days ago by i.sudbery 19k
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440
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Answer: Answer: How goes gene length effect the number of reads mapped
18 days ago by i.sudbery 19k
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461
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Answer: Answer: What purposes can TPM values be used for?
18 days ago by i.sudbery 19k
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0
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212
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Comment: Comment: Alternatives to metanalyisis. P integration. Horiztonal integration RNA-seq
19 days ago by i.sudbery 19k
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2.3k
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Comment: Comment: NGS forensics: how to know if data is fabricated
21 days ago by i.sudbery 19k
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0
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650
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Comment: Comment: Low mapping rate with Salmon
21 days ago by i.sudbery 19k
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1
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2.3k
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Comment: Comment: NGS forensics: how to know if data is fabricated
21 days ago by i.sudbery 19k
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354
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Comment: Comment: ChIP-seq datasets: input samples omitted?
22 days ago by i.sudbery 19k
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0
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174
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Answer: Answer: How to solve DESeq2 Error in checkFullRank(modelMatrix)?
22 days ago by i.sudbery 19k
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1
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2.3k
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Comment: Comment: NGS forensics: how to know if data is fabricated
22 days ago by i.sudbery 19k
1
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0
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2.3k
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Comment: Comment: NGS forensics: how to know if data is fabricated
22 days ago by i.sudbery 19k
0
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1
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650
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Comment: Comment: Low mapping rate with Salmon
24 days ago by i.sudbery 19k
1
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0
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386
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Comment: Comment: what is the purpose of indexing the reference genome (Kallisto)
24 days ago by i.sudbery 19k
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0
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454
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Comment: Comment: Ideal PC configurations and operating system for bioinformatics laboratory
27 days ago by i.sudbery 19k
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1
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650
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Comment: Comment: Low mapping rate with Salmon
28 days ago by i.sudbery 19k
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0
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555
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Comment: Comment: Marking duplicates using UMIs
29 days ago by i.sudbery 19k
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1
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555
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Comment: Comment: Marking duplicates using UMIs
29 days ago by i.sudbery 19k
2
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0
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275
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Answer: Answer: Trouble understanding seemingly contradicting results of GSE analysis (contradic
5 weeks ago by i.sudbery 19k
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1
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1.3k
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Comment: Comment: How I know if it is a batch effect or are real differences between my controls a
6 weeks ago by i.sudbery 19k
6
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1
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1.3k
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Answer: Answer: ¿How I know if it is a batch effect or are real differences between my controls
6 weeks ago by i.sudbery 19k
1
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1
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482
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Comment: Comment: chromHMM annotations
6 weeks ago by i.sudbery 19k
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1
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482
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Answer: Answer: chromHMM annotations
6 weeks ago by i.sudbery 19k
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1
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470
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Comment: Comment: DESeq: too low p-value for RNAseq
6 weeks ago by i.sudbery 19k
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0
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415
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Comment: Comment: Mathematical/Statistical models to predict mRNA half-life
9 weeks ago by i.sudbery 19k
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1
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511
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Answer: Answer: UMI_extract for paired end reads of micro_RNA
9 weeks ago by i.sudbery 19k
1
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0
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221
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Answer: Answer: Detecting presence of UMI from BAM/fastq files without prior knowledge
9 weeks ago by i.sudbery 19k
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1
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607
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Answer: Answer: conda install -Killed
9 weeks ago by i.sudbery 19k
1
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0
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396
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Answer: Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
10 weeks ago by i.sudbery 19k
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0
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230
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Comment: Comment: RNA-seq DE with AAV injection
10 weeks ago by i.sudbery 19k
1
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1
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756
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Comment: Comment: Difference between GLM and Wilcoxon rank sum test
10 weeks ago by i.sudbery 19k
3
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1
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756
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Answer: Answer: Difference between GLM and Wilcoxon rank sum test
10 weeks ago by i.sudbery 19k
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0
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617
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Comment: Comment: minimap2 gets killed, but it doesn't explain why
11 weeks ago by i.sudbery 19k
2
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1
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291
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Answer: Answer: Error from cgat gtf2gtf --method=genes-to-unique-chunks
11 weeks ago by i.sudbery 19k
0
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0
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615
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Comment: Comment: Multiple unique reads sharing same UMI barcode
12 weeks ago by i.sudbery 19k
2
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1
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846
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Answer: Answer: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
12 weeks ago by i.sudbery 19k
0
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1
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615
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Comment: Comment: Multiple unique reads sharing same UMI barcode
12 weeks ago by i.sudbery 19k
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1
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615
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Comment: Comment: Multiple unique reads sharing same UMI barcode
12 weeks ago by i.sudbery 19k
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1
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404
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Answer: Answer: perplexed regarding the process of gene expression normalision
12 weeks ago by i.sudbery 19k
1
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0
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313
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Answer: Answer: Heteroscedasticity in RNA-seq data
3 months ago by i.sudbery 19k
1,507 results • Page 1 of 31
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