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Answer: Answer: Umi dedup with fastp
10 months ago by i.sudbery 19k
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Answer: Answer: Don't choose Novogene for your sequencing projects
10 months ago by i.sudbery 19k
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1.2k
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Answer: Answer: losing many genes while doing DGE on the RNAseq data due to read count threshold
10 months ago by i.sudbery 19k
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Answer: Answer: How to allocate memory and CPU without SLURM in a linux cluster?
10 months ago by i.sudbery 19k
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808
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Answer: Answer: correlation plot, FDR value
10 months ago by i.sudbery 19k
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Answer: Answer: How reproducible is transcript quantification through salmon?
10 months ago by i.sudbery 19k
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Answer: Answer: Is it possible to use salmon alevin tool for total rna seq samples?
11 months ago by i.sudbery 19k
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478
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Answer: Answer: Making use of relative density of genomic features between gene sets
11 months ago by i.sudbery 19k
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Answer: Answer: Would solving many Rosalind problems show your ability for this field in job-w
11 months ago by i.sudbery 19k
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Answer: Answer: Do rna SRA files contain introns ?
11 months ago by i.sudbery 19k
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Answer: Answer: Alignment of case vs. control from different origin
11 months ago by i.sudbery 19k
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807
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Answer: Answer: Using t test to compare z-scores from RNA expression data
12 months ago by i.sudbery 19k
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1.2k
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Answer: Answer: Design matrix to remove technical replicate effect
12 months ago by i.sudbery 19k
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Answer: Answer: which options to select with UMI-tools and BCLconvert for deduplication of reads
12 months ago by i.sudbery 19k
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886
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Answer: Answer: Can I use umi_tools to discard cell barcodes and extract the UMI while keeping t
12 months ago by i.sudbery 19k
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427
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Answer: Answer: DESEQ2 FORMULAS FOR PAIRED SAMPLES
13 months ago by i.sudbery 19k
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Answer: Answer: Installing pybedtools in Windows 10
13 months ago by i.sudbery 19k
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1.4k
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Answer: Answer: Exon vs Transcript in featurecounts for RNA Seq
13 months ago by i.sudbery 19k
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4.5k
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Answer: Answer: I want to correct the erroneous barcode file, and the Python code that I've writ
13 months ago by i.sudbery 19k
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Answer: Answer: Pooling animal samples to a lower number of replicates vs. sequencing a subgroup
13 months ago by i.sudbery 19k
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801
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Answer: Answer: Why can’t we have full-length transcripts with droplet-based technologies ?
13 months ago by i.sudbery 19k
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996
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Answer: Answer: PCA in gene expression
14 months ago by i.sudbery 19k
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1.0k
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Answer: Answer: Benjamini–Hochberg correction, FDR in genes' expressions
14 months ago by i.sudbery 19k
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2.2k
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Answer: Answer: gtf2bed not converting to bed
14 months ago by i.sudbery 19k
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972
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Answer: Answer: Tissue-dependent usage of exons
14 months ago by i.sudbery 19k
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517
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Answer: Answer: Could I consider an ENCODE experiment with two library as two replicates for dif
14 months ago by i.sudbery 19k
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1.6k
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Answer: Answer: Discrepancy between Log2(x) and Log2(x+1) regarding Log2FC
14 months ago by i.sudbery 19k
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1.0k
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Answer: Answer: kallisto -s o error
14 months ago by i.sudbery 19k
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1.1k
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Answer: Answer: Problem with universe argument in enrichKEGG
14 months ago by i.sudbery 19k
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738
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Answer: Answer: Differential expression vs tissue specific expression
14 months ago by i.sudbery 19k
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7.1k
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Answer: Answer: How to choose Normalization methods (TPM/RPKM/FPKM) for mRNA expression
14 months ago by i.sudbery 19k
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Answer: Answer: Comparing log2-fold changes to find elements with virtually the same log2-fold c
14 months ago by i.sudbery 19k
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680
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Answer: Answer: how to decide the if the IDR result is good or not
14 months ago by i.sudbery 19k
6
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936
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Answer: Answer: Can FPKM data sets be of any use or are they trash?
15 months ago by i.sudbery 19k
2
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814
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Answer: Answer: Do I need to adjust the pvalue if I am only going to test one gene from omics da
15 months ago by i.sudbery 19k
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1.0k
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Answer: Answer: High downstream gene expression
15 months ago by i.sudbery 19k
2
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0
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781
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Answer: Answer: mirbase does not have miRNA annotation of my species, what are the alternatives?
15 months ago by i.sudbery 19k
2
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727
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Answer: Answer: isoform compostion (psi) question
16 months ago by i.sudbery 19k
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2.2k
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Answer: Answer: Hugely different results between edgeR and DESeq2
16 months ago by i.sudbery 19k
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2.7k
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Answer: Answer: STAR aligner can't map too short reads
16 months ago by i.sudbery 19k
2
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1.5k
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Answer: Answer: UMI-tools deduplication of reads with UMI at the start of the line
16 months ago by i.sudbery 19k
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1.2k
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Answer: Answer: Removing umi split off as a separate fastq (RNA-seq)
16 months ago by i.sudbery 19k
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602
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Answer: Answer: How to perform comparison between two differentially expressed data
17 months ago by i.sudbery 19k
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Answer: Answer: Non-adjusted p-value used in publication
17 months ago by i.sudbery 19k
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2.3k
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Answer: Answer: How to decide when to have local hardware vs cloud computing?
17 months ago by i.sudbery 19k
2
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488
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Answer: Answer: how to deal with strong sample heterogenous effects in RNAseq
updated 17 months ago by 44k • written 17 months ago by 19k
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672
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Answer: Answer: Can I use GTEx RNA-seq gene read data compare the gene expression difference bet
17 months ago by i.sudbery 19k
2
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2.2k
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Answer: Answer: When is it advantageous to use a non-splice aware aligner like BowTie2 over a sp
17 months ago by i.sudbery 19k
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624
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Answer: Answer: Which one do you recommend for the problem with the smaller number of normal sam
18 months ago by i.sudbery 19k
2
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1
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858
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Answer: Answer: Evaluating RNASeq counts distribution
18 months ago by i.sudbery 19k
566 results • Page 2 of 12
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