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Answer: Answer: How to solve DESeq2 Error in checkFullRank(modelMatrix)?
1 day ago by i.sudbery 19k
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252
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Answer: Answer: Trouble understanding seemingly contradicting results of GSE analysis (contradic
15 days ago by i.sudbery 19k
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1.2k
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Answer: Answer: ¿How I know if it is a batch effect or are real differences between my controls
22 days ago by i.sudbery 19k
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428
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Answer: Answer: chromHMM annotations
25 days ago by i.sudbery 19k
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446
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Answer: Answer: UMI_extract for paired end reads of micro_RNA
7 weeks ago by i.sudbery 19k
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186
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Answer: Answer: Detecting presence of UMI from BAM/fastq files without prior knowledge
7 weeks ago by i.sudbery 19k
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504
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Answer: Answer: conda install -Killed
7 weeks ago by i.sudbery 19k
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366
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Answer: Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
7 weeks ago by i.sudbery 19k
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636
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Answer: Answer: Difference between GLM and Wilcoxon rank sum test
8 weeks ago by i.sudbery 19k
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268
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Answer: Answer: Error from cgat gtf2gtf --method=genes-to-unique-chunks
8 weeks ago by i.sudbery 19k
2
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795
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Answer: Answer: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
9 weeks ago by i.sudbery 19k
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381
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Answer: Answer: perplexed regarding the process of gene expression normalision
9 weeks ago by i.sudbery 19k
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289
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Answer: Answer: Heteroscedasticity in RNA-seq data
10 weeks ago by i.sudbery 19k
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645
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Answer: Answer: question on how differential expression is affected if there is differential abu
10 weeks ago by i.sudbery 19k
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408
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Answer: Answer: Enrichment Analysis with Fisher's exact test
11 weeks ago by i.sudbery 19k
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284
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Answer: Answer: Calling variants with UMI-collapsed duplex consensus reads
11 weeks ago by i.sudbery 19k
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428
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Answer: Answer: UMI workflow resulting in bams with empty reads
11 weeks ago by i.sudbery 19k
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399
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Answer: Answer: How to fix DESeq2 Error in checkFullRank(modelMatrix)
12 weeks ago by i.sudbery 19k
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602
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Answer: Answer: Why employ normalization methods, and how can they be utilized in DEG analysis?
12 weeks ago by i.sudbery 19k
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251
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Answer: Answer: Is it possible to identify the strand of an RNA using UMI?
12 weeks ago by i.sudbery 19k
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809
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Answer: Answer: Tower Server configuration for NGS data analysis
3 months ago by i.sudbery 19k
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259
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Answer: Answer: Differential Abundance between samples
3 months ago by i.sudbery 19k
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1.6k
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Answer: Answer: GOSeq gene ontology enrichment analysis in rice
3 months ago by i.sudbery 19k
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207
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Answer: Answer: Batch correction for eQTL analysis
3 months ago by i.sudbery 19k
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995
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Answer: Answer: How to overcome the imposter syndrome in bioinformatics?
3 months ago by i.sudbery 19k
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1.4k
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Answer: Answer: How to speed Salmon index up
3 months ago by i.sudbery 19k
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657
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Answer: Answer: UMI-tools no tsv files at deduplication
3 months ago by i.sudbery 19k
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2.1k
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Answer: Answer: Determining computer time required
3 months ago by i.sudbery 19k
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868
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Answer: Answer: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
updated 3 months ago by 43k • written 3 months ago by 19k
4
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527
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Answer: Answer: Differential expression analysis in a short gene list
3 months ago by i.sudbery 19k
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532
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Answer: Answer: Question about identification of DEGs in paired sample using edgeR
3 months ago by i.sudbery 19k
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585
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Answer: Answer: Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
updated 4 months ago by 43k • written 4 months ago by 19k
3
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838
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Answer: Answer: installing DESeq2 on Windows
4 months ago by i.sudbery 19k
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1.7k
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Answer: Answer: What apps can read large FASTQ files on Windows?
4 months ago by i.sudbery 19k
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563
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Answer: Answer: Best method for batch correction of three datasets
updated 4 months ago by 82k • written 4 months ago by 19k
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350
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Answer: Answer: multiple condition and time course in RNA-seq
5 months ago by i.sudbery 19k
2
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621
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Answer: Answer: Does DESeq2 correct for library size when importing the counts with DESeqDataSet
5 months ago by i.sudbery 19k
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1.2k
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Answer: Answer: Is my data too noisy for DESeq? Should I model noise as unwanted variation?
5 months ago by i.sudbery 19k
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4
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1.3k
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Answer: Answer: Dealing with transcriptome sequences that are smaller than their respective gene
7 months ago by i.sudbery 19k
3
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1.7k
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Answer: Answer: Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
7 months ago by i.sudbery 19k
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773
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Answer: Answer: From where can I obtain vcf files of healthy exomes
7 months ago by i.sudbery 19k
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1.5k
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Answer: Answer: Is Bioinformatics a Professional Degree?
8 months ago by i.sudbery 19k
4
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1.1k
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Answer: Answer: Can one sample t.test be used to determine statistical significance for log2FC v
8 months ago by i.sudbery 19k
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938
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Answer: Answer: Understaning the result of Meta-analysis of differential expression across datas
8 months ago by i.sudbery 19k
2
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2
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933
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Answer: Answer: RSEM uses different gene lengths for each sample.
8 months ago by i.sudbery 19k
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723
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Answer: Answer: Quantification of allele-specific gene expression in RNA-seq
9 months ago by i.sudbery 19k
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977
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Answer: Answer: Umi dedup with fastp
9 months ago by i.sudbery 19k
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1.9k
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Answer: Answer: Don't choose Novogene for your sequencing projects
9 months ago by i.sudbery 19k
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1.2k
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Answer: Answer: losing many genes while doing DGE on the RNAseq data due to read count threshold
9 months ago by i.sudbery 19k
2
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1.3k
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Answer: Answer: How to allocate memory and CPU without SLURM in a linux cluster?
9 months ago by i.sudbery 19k
562 results • Page 1 of 12
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