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Comment: Comment: NGS forensics: how to know if data is fabricated
12 hours ago by i.sudbery 19k
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450
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Comment: Comment: Low mapping rate with Salmon
12 hours ago by i.sudbery 19k
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1.7k
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Comment: Comment: NGS forensics: how to know if data is fabricated
1 day ago by i.sudbery 19k
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271
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Comment: Comment: ChIP-seq datasets: input samples omitted?
1 day ago by i.sudbery 19k
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124
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Answer: Answer: How to solve DESeq2 Error in checkFullRank(modelMatrix)?
1 day ago by i.sudbery 19k
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1.7k
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Comment: Comment: NGS forensics: how to know if data is fabricated
1 day ago by i.sudbery 19k
1
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0
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1.7k
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Comment: Comment: NGS forensics: how to know if data is fabricated
1 day ago by i.sudbery 19k
0
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1
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450
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Comment: Comment: Low mapping rate with Salmon
4 days ago by i.sudbery 19k
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320
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Comment: Comment: what is the purpose of indexing the reference genome (Kallisto)
4 days ago by i.sudbery 19k
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281
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Comment: Comment: Ideal PC configurations and operating system for bioinformatics laboratory
7 days ago by i.sudbery 19k
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450
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Comment: Comment: Low mapping rate with Salmon
8 days ago by i.sudbery 19k
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473
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Comment: Comment: Marking duplicates using UMIs
8 days ago by i.sudbery 19k
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473
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Comment: Comment: Marking duplicates using UMIs
9 days ago by i.sudbery 19k
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251
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Answer: Answer: Trouble understanding seemingly contradicting results of GSE analysis (contradic
15 days ago by i.sudbery 19k
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1.2k
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Comment: Comment: How I know if it is a batch effect or are real differences between my controls a
22 days ago by i.sudbery 19k
6
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1.2k
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Answer: Answer: ¿How I know if it is a batch effect or are real differences between my controls
22 days ago by i.sudbery 19k
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427
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Comment: Comment: chromHMM annotations
22 days ago by i.sudbery 19k
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427
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Answer: Answer: chromHMM annotations
25 days ago by i.sudbery 19k
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413
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Comment: Comment: DESeq: too low p-value for RNAseq
26 days ago by i.sudbery 19k
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382
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Comment: Comment: Mathematical/Statistical models to predict mRNA half-life
6 weeks ago by i.sudbery 19k
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1
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446
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Answer: Answer: UMI_extract for paired end reads of micro_RNA
7 weeks ago by i.sudbery 19k
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184
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Answer: Answer: Detecting presence of UMI from BAM/fastq files without prior knowledge
7 weeks ago by i.sudbery 19k
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1
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500
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Answer: Answer: conda install -Killed
7 weeks ago by i.sudbery 19k
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365
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Answer: Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
7 weeks ago by i.sudbery 19k
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208
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Comment: Comment: RNA-seq DE with AAV injection
7 weeks ago by i.sudbery 19k
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634
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Comment: Comment: Difference between GLM and Wilcoxon rank sum test
7 weeks ago by i.sudbery 19k
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634
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Answer: Answer: Difference between GLM and Wilcoxon rank sum test
8 weeks ago by i.sudbery 19k
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526
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Comment: Comment: minimap2 gets killed, but it doesn't explain why
8 weeks ago by i.sudbery 19k
2
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1
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268
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Answer: Answer: Error from cgat gtf2gtf --method=genes-to-unique-chunks
8 weeks ago by i.sudbery 19k
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0
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579
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Comment: Comment: Multiple unique reads sharing same UMI barcode
9 weeks ago by i.sudbery 19k
2
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1
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795
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Answer: Answer: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
9 weeks ago by i.sudbery 19k
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1
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579
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Comment: Comment: Multiple unique reads sharing same UMI barcode
9 weeks ago by i.sudbery 19k
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1
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579
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Comment: Comment: Multiple unique reads sharing same UMI barcode
9 weeks ago by i.sudbery 19k
1
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1
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380
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Answer: Answer: perplexed regarding the process of gene expression normalision
9 weeks ago by i.sudbery 19k
1
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286
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Answer: Answer: Heteroscedasticity in RNA-seq data
10 weeks ago by i.sudbery 19k
2
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0
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645
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Answer: Answer: question on how differential expression is affected if there is differential abu
10 weeks ago by i.sudbery 19k
1
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406
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Comment: Comment: Enrichment Analysis with Fisher's exact test
11 weeks ago by i.sudbery 19k
2
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2
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406
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Answer: Answer: Enrichment Analysis with Fisher's exact test
11 weeks ago by i.sudbery 19k
0
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283
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Answer: Answer: Calling variants with UMI-collapsed duplex consensus reads
11 weeks ago by i.sudbery 19k
2
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1
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427
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Answer: Answer: UMI workflow resulting in bams with empty reads
11 weeks ago by i.sudbery 19k
0
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0
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397
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Comment: Comment: How to fix DESeq2 Error in checkFullRank(modelMatrix)
12 weeks ago by i.sudbery 19k
3
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1
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397
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Answer: Answer: How to fix DESeq2 Error in checkFullRank(modelMatrix)
12 weeks ago by i.sudbery 19k
1
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1
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514
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Comment: Comment: How to predication/annotation trans-splicing in genome
12 weeks ago by i.sudbery 19k
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424
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Comment: Comment: Difference between mRNA and transcript record types in GFF3 and GTF
12 weeks ago by i.sudbery 19k
2
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1
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424
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Comment: Comment: Difference between mRNA and transcript record types in GFF3 and GTF
12 weeks ago by i.sudbery 19k
5
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1
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601
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Answer: Answer: Why employ normalization methods, and how can they be utilized in DEG analysis?
12 weeks ago by i.sudbery 19k
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250
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Answer: Answer: Is it possible to identify the strand of an RNA using UMI?
12 weeks ago by i.sudbery 19k
1
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600
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Comment: Comment: PCA plot interpretation (single population)
3 months ago by i.sudbery 19k
2
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0
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809
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Comment: Comment: Tower Server configuration for NGS data analysis
3 months ago by i.sudbery 19k
2
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0
replies
809
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Answer: Answer: Tower Server configuration for NGS data analysis
3 months ago by i.sudbery 19k
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