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Comment: Comment: transcriptomic data for molecular subtyping
11 weeks ago by mark.ziemann ★ 1.9k
2
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408
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Answer: Answer: How to find GO function from GEO2R results
11 weeks ago by mark.ziemann ★ 1.9k
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1
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357
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Answer: Answer: transcriptomic data for molecular subtyping
11 weeks ago by mark.ziemann ★ 1.9k
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0
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231
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Answer: Answer: Aneuploidy analysis from WGS
11 weeks ago by mark.ziemann ★ 1.9k
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1
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475
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Comment: Comment: Simulation of gene level methylation data
11 weeks ago by mark.ziemann ★ 1.9k
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2
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689
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Answer: Answer: Geo2R troubleshooting
3 months ago by mark.ziemann ★ 1.9k
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1
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475
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Answer: Answer: Simulation of gene level methylation data
3 months ago by mark.ziemann ★ 1.9k
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1
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564
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Answer: Answer: Methods to analyze EM-seq data
3 months ago by mark.ziemann ★ 1.9k
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484
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Comment: Comment: Error in mitch reports in R
3 months ago by mark.ziemann ★ 1.9k
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440
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Answer: Answer: mitch analysis report priority by standard deviation
3 months ago by mark.ziemann ★ 1.9k
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265
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Answer: Answer: How to get differntial Protein expression from protein abundance?
3 months ago by mark.ziemann ★ 1.9k
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511
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Comment: Comment: Single-end strand specific Rna-Seq: Which strand that the reads from.
8 months ago by mark.ziemann ★ 1.9k
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1
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627
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Comment: Comment: ClusterProfiler GeneRatio demoninator not the same for all values
8 months ago by mark.ziemann ★ 1.9k
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0
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713
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Answer: Answer: Biological replicates in RNA-seq
11 months ago by mark.ziemann ★ 1.9k
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1
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495
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Answer: Answer: clusterprofile enrichment analysis
11 months ago by mark.ziemann ★ 1.9k
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1.3k
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Comment: Comment: Clusterprofiler error: No gene can be mapped (different from previous posts)
16 months ago by mark.ziemann ★ 1.9k
3
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1
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899
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Answer: Answer: What exactly are unmappable regions?
16 months ago by mark.ziemann ★ 1.9k
2
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1
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1.7k
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Answer: Answer: gseGO by fold-change returns errors
16 months ago by mark.ziemann ★ 1.9k
1
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1
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582
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Comment: Comment: How can I quantify degradation of DNA present in the sample after sequencing?
17 months ago by mark.ziemann ★ 1.9k
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0
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742
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Answer: Answer: Combining multiple datasets increases the fgsea p-value
17 months ago by mark.ziemann ★ 1.9k
4
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0
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1.3k
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Answer: Answer: How to create a new gene signature from RNAseq data
21 months ago by mark.ziemann ★ 1.9k
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0
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576
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Comment: Comment: Finding the similarity between two arrays of sequences
21 months ago by mark.ziemann ★ 1.9k
1
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1
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626
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Answer: Answer: Horizontal Gene Tranfer/Recombination
21 months ago by mark.ziemann ★ 1.9k
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0
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1.4k
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Comment: Comment: feature counts invalid parameter
21 months ago by mark.ziemann ★ 1.9k
3
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1
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615
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Answer: Answer: Removing or Setting pairs to NA based on conditions in another data frame (R)
21 months ago by mark.ziemann ★ 1.9k
2
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1
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847
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Comment: Comment: GSEA - Software or R
21 months ago by mark.ziemann ★ 1.9k
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1
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690
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Comment: Comment: blastn command line
21 months ago by mark.ziemann ★ 1.9k
1
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1
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738
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Answer: Answer: sequence error
21 months ago by mark.ziemann ★ 1.9k
2
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0
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1.2k
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Answer: Answer: GC content calculation in percentage
21 months ago by mark.ziemann ★ 1.9k
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0
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566
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Answer: Answer: Pathway Enrichment Analysis according to tumor mutation burden.
21 months ago by mark.ziemann ★ 1.9k
0
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0
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1.5k
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Comment: Comment: How can I do an inner_join with multiple .csv files on the linux command line?
21 months ago by mark.ziemann ★ 1.9k
3
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2
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1.5k
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Answer: Answer: How can I do an inner_join with multiple .csv files on the linux command line?
21 months ago by mark.ziemann ★ 1.9k
1
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0
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736
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Comment: Comment: DNA sequencing from cord blood stem cells
22 months ago by mark.ziemann ★ 1.9k
1
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0
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522
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Comment: Comment: Differential Gene Expression of lncRNAs analysis from GENCODE reference file?
22 months ago by mark.ziemann ★ 1.9k
2
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1
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736
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Answer: Answer: DNA sequencing from cord blood stem cells
22 months ago by mark.ziemann ★ 1.9k
2
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0
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598
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Answer: Answer: Accessing particular gene set with msigdbr on R
22 months ago by mark.ziemann ★ 1.9k
4
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1
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729
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Answer: Answer: Repeats/Transposons finding
22 months ago by mark.ziemann ★ 1.9k
0
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1
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584
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Answer: Answer: How to get gene expression data from list of gene
22 months ago by mark.ziemann ★ 1.9k
0
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0
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904
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Comment: Comment: 3d plot in matplotlib of my own data
22 months ago by mark.ziemann ★ 1.9k
2
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0
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650
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Comment: Comment: Good statistics for RNA-seq alignments using RSEM
22 months ago by mark.ziemann ★ 1.9k
1
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0
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397
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Answer: Answer: Bacterial small-rna analysis
22 months ago by mark.ziemann ★ 1.9k
0
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0
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2.8k
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Comment: Comment: mapping reads using kallisto - rna seq analysis
22 months ago by mark.ziemann ★ 1.9k
0
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0
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1.5k
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Comment: Comment: RepeatMasker error
22 months ago by mark.ziemann ★ 1.9k
0
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1
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2.8k
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Comment: Comment: mapping reads using kallisto - rna seq analysis
22 months ago by mark.ziemann ★ 1.9k
2
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0
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575
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Answer: Answer: GO Term Analysis in scRNASeq data with low number of genes expressed
22 months ago by mark.ziemann ★ 1.9k
1
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0
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484
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Answer: Answer: How to identify the genome build a dataset was aligned too?
22 months ago by mark.ziemann ★ 1.9k
0
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0
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867
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Comment: Comment: NGS reads calculation
22 months ago by mark.ziemann ★ 1.9k
1
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1
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1.5k
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Comment: Comment: RepeatMasker error
22 months ago by mark.ziemann ★ 1.9k
15
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11
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4.7k
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9 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA DAVID enrichment-analysis -geneontology
updated 11 months ago by 43k • written 2.2 years ago by ★ 1.9k
1
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0
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1.4k
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Comment: Comment: DMR calling for EWAS meta-analysis
2.4 years ago by mark.ziemann ★ 1.9k
210 results • Page 1 of 5
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