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393
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Answer: Answer: How to find GO function from GEO2R results
9 weeks ago by mark.ziemann ★ 1.9k
1
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1
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336
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Answer: Answer: transcriptomic data for molecular subtyping
9 weeks ago by mark.ziemann ★ 1.9k
0
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0
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213
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Answer: Answer: Aneuploidy analysis from WGS
9 weeks ago by mark.ziemann ★ 1.9k
1
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2
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638
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Answer: Answer: Geo2R troubleshooting
11 weeks ago by mark.ziemann ★ 1.9k
0
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1
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451
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Answer: Answer: Simulation of gene level methylation data
11 weeks ago by mark.ziemann ★ 1.9k
1
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1
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536
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Answer: Answer: Methods to analyze EM-seq data
12 weeks ago by mark.ziemann ★ 1.9k
0
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0
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431
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Answer: Answer: mitch analysis report priority by standard deviation
3 months ago by mark.ziemann ★ 1.9k
1
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0
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252
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Answer: Answer: How to get differntial Protein expression from protein abundance?
3 months ago by mark.ziemann ★ 1.9k
0
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0
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699
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Answer: Answer: Biological replicates in RNA-seq
11 months ago by mark.ziemann ★ 1.9k
0
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1
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469
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Answer: Answer: clusterprofile enrichment analysis
11 months ago by mark.ziemann ★ 1.9k
3
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1
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873
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Answer: Answer: What exactly are unmappable regions?
15 months ago by mark.ziemann ★ 1.9k
2
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1
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1.6k
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Answer: Answer: gseGO by fold-change returns errors
15 months ago by mark.ziemann ★ 1.9k
0
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0
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731
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Answer: Answer: Combining multiple datasets increases the fgsea p-value
16 months ago by mark.ziemann ★ 1.9k
4
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0
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1.3k
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Answer: Answer: How to create a new gene signature from RNAseq data
21 months ago by mark.ziemann ★ 1.9k
1
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1
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616
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Answer: Answer: Horizontal Gene Tranfer/Recombination
21 months ago by mark.ziemann ★ 1.9k
3
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1
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606
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Answer: Answer: Removing or Setting pairs to NA based on conditions in another data frame (R)
21 months ago by mark.ziemann ★ 1.9k
1
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1
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724
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Answer: Answer: sequence error
21 months ago by mark.ziemann ★ 1.9k
2
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0
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1.2k
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Answer: Answer: GC content calculation in percentage
21 months ago by mark.ziemann ★ 1.9k
0
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0
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556
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Answer: Answer: Pathway Enrichment Analysis according to tumor mutation burden.
21 months ago by mark.ziemann ★ 1.9k
3
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2
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1.5k
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Answer: Answer: How can I do an inner_join with multiple .csv files on the linux command line?
21 months ago by mark.ziemann ★ 1.9k
2
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1
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721
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Answer: Answer: DNA sequencing from cord blood stem cells
21 months ago by mark.ziemann ★ 1.9k
2
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0
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586
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Answer: Answer: Accessing particular gene set with msigdbr on R
21 months ago by mark.ziemann ★ 1.9k
4
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1
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711
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Answer: Answer: Repeats/Transposons finding
21 months ago by mark.ziemann ★ 1.9k
0
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1
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575
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Answer: Answer: How to get gene expression data from list of gene
21 months ago by mark.ziemann ★ 1.9k
1
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0
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385
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Answer: Answer: Bacterial small-rna analysis
21 months ago by mark.ziemann ★ 1.9k
2
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0
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563
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Answer: Answer: GO Term Analysis in scRNASeq data with low number of genes expressed
21 months ago by mark.ziemann ★ 1.9k
1
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0
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476
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Answer: Answer: How to identify the genome build a dataset was aligned too?
21 months ago by mark.ziemann ★ 1.9k
0
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0
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1.1k
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Answer: A: Number of replicates in each group in RNA seq
3.6 years ago by mark.ziemann ★ 1.9k
1
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0
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846
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Answer: A: CAST/EiJ mouse strain Reference Transcriptome (do we have one? if not, how to bu
3.6 years ago by mark.ziemann ★ 1.9k
0
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0
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1.4k
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Answer: A: Location of Genes on Chromosome
4.2 years ago by mark.ziemann ★ 1.9k
0
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1
reply
5.8k
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Answer: A: /bin/bash/ command not found
4.2 years ago by mark.ziemann ★ 1.9k
2
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1
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3.9k
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Answer: A: RNA seq with 2 biological replicates
4.2 years ago by mark.ziemann ★ 1.9k
1
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0
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1.5k
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Answer: A: Safe to convert entrez gene id to ensembl gene id
4.2 years ago by mark.ziemann ★ 1.9k
0
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0
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1.3k
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Answer: A: How to decide the parameters and parameter values when running ChIP-seq Peak Cal
4.2 years ago by mark.ziemann ★ 1.9k
2
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0
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623
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Answer: A: Primer Design Validation
4.2 years ago by mark.ziemann ★ 1.9k
6
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0
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25k
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Answer: A: BWA MEM Algorithm
updated 4.3 years ago by 43k • written 9.0 years ago by ★ 1.9k
1
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0
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1.8k
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Answer: A: Software to count gene loss in batch
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 1.9k
0
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0
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2.9k
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Answer: A: Is there an online resource with freely available transcriptomes data from?
4.4 years ago by mark.ziemann ★ 1.9k
1
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0
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738
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Answer: A: Is BWT algorithm suitable for all types of alignment task?
4.4 years ago by mark.ziemann ★ 1.9k
1
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1
reply
3.1k
views
Answer: A: How to discover new mutations in a derived strain relative to a reference genome
updated 4.5 years ago by 43k • written 8.8 years ago by ★ 1.9k
0
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0
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5.4k
views
Answer: A: counting reads with featureCounts - uniquely assign reads to transcripts
updated 4.5 years ago by 43k • written 8.8 years ago by ★ 1.9k
2
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1
reply
2.6k
views
Answer: Answer: Help simulating RRBS reads
updated 15 months ago by 43k • written 8.9 years ago by ★ 1.9k
1
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0
replies
14k
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Answer: A: Extracting specific FASTA sequences from a complex FASTA file
updated 4.5 years ago by 43k • written 9.2 years ago by ★ 1.9k
5
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1
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4.6k
views
Answer: A: fgsea tutorial issue with BiocParallel
5.2 years ago by mark.ziemann ★ 1.9k
1
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0
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1.8k
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Answer: A: Meta-Analysis p-value combining and adjusting
5.6 years ago by mark.ziemann ★ 1.9k
0
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1
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1.3k
views
Answer: A: Obtaining DEGs for bacterial RNA-sequencing study (levels of UV exposure)
6.2 years ago by mark.ziemann ★ 1.9k
2
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0
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3.3k
views
Answer: A: Why do ribo-seq sequencing data have only a small proportion of uniquely mapped
6.5 years ago by mark.ziemann ★ 1.9k
2
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1
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3.3k
views
Answer: A: Why do ribo-seq sequencing data have only a small proportion of uniquely mapped
6.5 years ago by mark.ziemann ★ 1.9k
3
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0
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2.1k
views
Answer: A: Looking for publicly available dataset.
6.5 years ago by mark.ziemann ★ 1.9k
2
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0
replies
2.0k
views
Answer: A: Download ENCODE Project BED files using REST API
6.8 years ago by mark.ziemann ★ 1.9k
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