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22
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17
replies
21k
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Download full list of SNPs and their coordinates in hg38
SNP hg38 SNPsnap DBsnp population genetics
updated 17 months ago by ▴ 180 • written 6.0 years ago by ▴ 260
7
votes
31
replies
15k
views
Scale and Center [normalized] RNA-seq expression counts for PCA ?
sequencing pca genome R RNA-Seq
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 260
23
votes
22
replies
49k
views
6 follow
Converting VCF to PLINK .bed binary fileset to check for pedigree errors with KING: How do conversion tools make the PLINK .fam file, without asking …
plink vcf fam gatk vcftools
updated 17 months ago by • 0 • written 6.0 years ago by ▴ 260
5
votes
3
replies
1.3k
views
SNP panel interrogated by KING for estimating kinship?
king SNP kinship GWAS
6.0 years ago by gaelgarcia ▴ 260
2
votes
2
replies
2.3k
views
Tools to check consistency between VCF genotypes and pedigree-stated sex and family relationships
SNP gatk VCF KING PLINK
updated 6.0 years ago by 10k • written 6.0 years ago by ▴ 260
4
votes
2
replies
1.6k
views
Obtaining list of / manually specifying interrogation sites in Peddy
SNP peddy pedigree identitycheck
6.0 years ago by gaelgarcia ▴ 260
5
votes
4
replies
1.7k
views
Determine whether SNPs in a list fall under the ranges of a BED file
SNP BED BEDTools R GenomicRanges
updated 6.0 years ago by 35k • written 6.0 years ago by ▴ 260
5
votes
3
replies
3.1k
views
Are different colonies from the same cell line valid biological replicates for DESeq 2?
DESeq2 RNA-Seq R
updated 2.2 years ago by 43k • written 8.8 years ago by ▴ 260
2
votes
2
replies
3.0k
views
Is there a good site or software to see if a primer pair spans an exon junction?
PCR exons qPCR primers
updated 18 months ago by 43k • written 8.7 years ago by ▴ 260
1
vote
2
replies
5.0k
views
Unequal number of technical and biological replicates per sample for RNA-Seq expriment?
DESeq sequencing RNA-Seq R DESeq2
updated 17 months ago by 43k • written 8.8 years ago by ▴ 260
0
votes
1
reply
2.0k
views
How can I save a pvclust object?
pvclust r object
updated 23 months ago by 43k • written 9.1 years ago by ▴ 260
3
votes
4
replies
4.8k
views
Must paired-end reads be in the same order in the two files for input to Tophat?
tophat rna-seq alignment sequencing
updated 9 months ago by ▴ 90 • written 9.2 years ago by ▴ 260
6
votes
3
replies
7.0k
views
How to set a threshold for coefficient of variation in RNA-seq?
dispersion statistics single-cell RNA-Seq variance
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 260
3
votes
5
replies
4.5k
views
Single-cell RNA-seq Outlier Identification : How can I find the subset of genes that are expressed in a common set of samples (cells) ? (Fluidigm SIN…
matrix rna-seq R subset single-cell
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 260
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