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Showing :
answers
5
votes
3
replies
12k
views
Answer:
A: Shifting reads for ATAC-seq alignments
8.1 years ago by
James Ashmore
★ 3.4k
1
vote
1
reply
2.7k
views
Answer:
C: goseq package: cannot find function supportedOrganisms()
8.1 years ago by
James Ashmore
★ 3.4k
3
votes
0
replies
7.3k
views
Answer:
A: Help, how to read wig files into R?
8.1 years ago by
James Ashmore
★ 3.4k
5
votes
1
reply
5.7k
views
Answer:
A: retrieve 1000 bp upstream sequences
8.2 years ago by
James Ashmore
★ 3.4k
1
vote
0
replies
2.1k
views
Answer:
A: Overlap chipseq regions with repetative regions
8.2 years ago by
James Ashmore
★ 3.4k
1
vote
1
reply
2.4k
views
Answer:
A: bedtools, linux, rnaseq
8.2 years ago by
James Ashmore
★ 3.4k
0
votes
0
replies
2.1k
views
Answer:
A: eliminate redundant lines in perl
8.2 years ago by
James Ashmore
★ 3.4k
4
votes
0
replies
2.9k
views
Answer:
A: Imprresive demonstration about bioinformatics analysis.
8.3 years ago by
James Ashmore
★ 3.4k
2
votes
1
reply
4.0k
views
Answer:
A: Python Programming (Suggestions are needed)
8.3 years ago by
James Ashmore
★ 3.4k
1
vote
0
replies
6.3k
views
Answer:
A: ATACseq alignment issues
8.4 years ago by
James Ashmore
★ 3.4k
0
votes
1
reply
3.5k
views
Answer:
A: Chip-Seq - How to do Quantile normalization on bam files?
8.5 years ago by
James Ashmore
★ 3.4k
4
votes
1
reply
1.5k
views
Answer:
A: Python syntax help (metaseq)
8.5 years ago by
James Ashmore
★ 3.4k
2
votes
1
reply
2.3k
views
Answer:
Answer: Calculate the number of paired-end reads their middle size is greater than # KB
updated 22 months ago by
Ram
43k • written 8.6 years ago by
James Ashmore
★ 3.4k
1
vote
0
replies
1.9k
views
Answer:
A: Gene search with known start and end site
8.6 years ago by
James Ashmore
★ 3.4k
0
votes
1
reply
16k
views
Answer:
A: How to generate BedGraph from BedTools Coverage?
8.6 years ago by
James Ashmore
★ 3.4k
4
votes
1
reply
6.1k
views
Answer:
Answer: problem with some argument in cutadapt
updated 20 months ago by
Ram
43k • written 8.6 years ago by
James Ashmore
★ 3.4k
4
votes
0
replies
5.6k
views
Answer:
A: GC content and Kmer
8.6 years ago by
James Ashmore
★ 3.4k
0
votes
2
replies
4.7k
views
Answer:
A: It seems that 'fastuniq' does not support fq.gz files. How to solve this except
8.6 years ago by
James Ashmore
★ 3.4k
4
votes
3
replies
3.1k
views
Answer:
A: Wrapping protein sequence output using python
8.6 years ago by
James Ashmore
★ 3.4k
1
vote
1
reply
4.7k
views
Answer:
Answer: coverage bed error but produces output file
updated 20 months ago by
Ram
43k • written 8.6 years ago by
James Ashmore
★ 3.4k
0
votes
1
reply
7.3k
views
Answer:
A: biopython: fetching a fasta sequence from coordinates
8.7 years ago by
James Ashmore
★ 3.4k
3
votes
0
replies
3.5k
views
Answer:
Answer: SRA to fastq
updated 20 months ago by
Ram
43k • written 8.7 years ago by
James Ashmore
★ 3.4k
1
vote
1
reply
4.7k
views
Answer:
A: why my txt file is empty????
8.7 years ago by
James Ashmore
★ 3.4k
2
votes
0
replies
3.4k
views
Answer:
A: Why is my fastq data on two files if I am supposed to have single end reads?
8.7 years ago by
James Ashmore
★ 3.4k
0
votes
1
reply
5.9k
views
Answer:
Answer: Annotate ouput file from Deseq2
updated 20 months ago by
Ram
43k • written 8.7 years ago by
James Ashmore
★ 3.4k
2
votes
2
replies
6.7k
views
Answer:
Answer: compare and search a list of ids in two text file
updated 2.2 years ago by
Ram
43k • written 8.7 years ago by
James Ashmore
★ 3.4k
0
votes
1
reply
3.4k
views
Answer:
A: error when concantenating eggNog hmmer file
8.7 years ago by
James Ashmore
★ 3.4k
0
votes
0
replies
2.0k
views
Answer:
Answer: merging sequences from bedtools options -name, -tab into one file
updated 19 months ago by
Ram
43k • written 8.7 years ago by
James Ashmore
★ 3.4k
0
votes
0
replies
2.5k
views
Answer:
A: FastQC quality control graphics for publication?
8.7 years ago by
James Ashmore
★ 3.4k
2
votes
0
replies
8.6k
views
Answer:
A: PCA plot Fig software
8.7 years ago by
James Ashmore
★ 3.4k
6
votes
1
reply
11k
views
Answer:
A: Binning Over Genes And Calculating The Coverage [Bedops/Bedmap]
8.7 years ago by
James Ashmore
★ 3.4k
4
votes
1
reply
6.2k
views
Answer:
Answer: Making TSS plots for some genes for a particular histone mark
updated 19 months ago by
Ram
43k • written 8.8 years ago by
James Ashmore
★ 3.4k
9
votes
1
reply
6.8k
views
Answer:
Answer: Annotating/Finding "NNNNNN" scaffold gaps in genome assembly
updated 19 months ago by
Ram
43k • written 8.8 years ago by
James Ashmore
★ 3.4k
0
votes
0
replies
5.8k
views
Answer:
A: Problem viewing BAM files in IGV - samtools sort error?
8.9 years ago by
James Ashmore
★ 3.4k
4
votes
1
reply
15k
views
Answer:
Answer: Can't convert paired end BAM to bed using bedtools
updated 17 months ago by
Ram
43k • written 8.9 years ago by
James Ashmore
★ 3.4k
1
vote
0
replies
2.7k
views
Answer:
Answer: Software for drawing peak shapes
updated 17 months ago by
Ram
43k • written 8.9 years ago by
James Ashmore
★ 3.4k
0
votes
0
replies
2.1k
views
Answer:
A: fasta generation for functional elements
8.9 years ago by
James Ashmore
★ 3.4k
2
votes
2
replies
2.1k
views
Answer:
Answer: Tool to retrieve regions with reads?
updated 17 months ago by
Ram
43k • written 8.9 years ago by
James Ashmore
★ 3.4k
0
votes
0
replies
3.0k
views
Answer:
A: Find all occurrences of a fixed sequence in a large genome
9.3 years ago by
James Ashmore
★ 3.4k
89 results • Page
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