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2
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0
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268
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Answer: Answer: Finding orthologs between genome error
25 days ago by Adrian Altenhoff ★ 1.1k
0
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0
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219
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Answer: Answer: Mapping of OMA IDs to UniProtKB AC
5 weeks ago by Adrian Altenhoff ★ 1.1k
2
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0
replies
1.0k
views
Answer: Answer: OMA in AWS cloud
7 months ago by Adrian Altenhoff ★ 1.1k
1
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0
replies
499
views
Answer: Answer: Downloading Microsyntenic Fasta Sequences with Varying Chromosome Formats
9 months ago by Adrian Altenhoff ★ 1.1k
1
vote
3
replies
1.2k
views
Answer: Answer: syntax errors when running part3 all-against-all
13 months ago by Adrian Altenhoff ★ 1.1k
1
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0
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751
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Answer: Answer: Obtaining every"Protein ID" from a genome in OMA
15 months ago by Adrian Altenhoff ★ 1.1k
1
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0
replies
437
views
Answer: Answer: Error, (in LoadSpliceMap) string to parse is too long
15 months ago by Adrian Altenhoff ★ 1.1k
1
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0
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722
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Answer: Answer: OMA standalone error during database conversion step: Matches between X/X have b
17 months ago by Adrian Altenhoff ★ 1.1k
0
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0
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474
views
Answer: Answer: To generate genome-wise orthologs including paralogs from OMA
17 months ago by Adrian Altenhoff ★ 1.1k
1
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0
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658
views
Answer: Answer: Orthologs distances in OMA
2.0 years ago by Adrian Altenhoff ★ 1.1k
2
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0
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516
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Answer: Answer: Multiple OMA groups per uniprotID in OMAdb
2.0 years ago by Adrian Altenhoff ★ 1.1k
0
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0
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590
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Answer: Answer: Error while running All-against-All alignments in OMA
2.2 years ago by Adrian Altenhoff ★ 1.1k
0
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0
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716
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Answer: Answer: OMA speed
2.5 years ago by Adrian Altenhoff ★ 1.1k
0
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0
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702
views
Answer: Answer: OMA standalone "FileStat" error
2.5 years ago by Adrian Altenhoff ★ 1.1k
1
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0
replies
836
views
Answer: Answer: OMA Internet connection error - SLURM
2.5 years ago by Adrian Altenhoff ★ 1.1k
1
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0
replies
715
views
Answer: A: oma-cleanup cannot be executed
3.2 years ago by Adrian Altenhoff ★ 1.1k
3
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1
reply
1.1k
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Answer: A: OMA standalone, parallelization
3.2 years ago by Adrian Altenhoff ★ 1.1k
1
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1
reply
1.2k
views
Answer: A: OMA-standalone and sequence gaps
3.3 years ago by Adrian Altenhoff ★ 1.1k
4
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2
replies
1.6k
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Answer: A: Error running OMA standalone at HOG computation step
3.4 years ago by Adrian Altenhoff ★ 1.1k
2
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1
reply
1.6k
views
Answer: A: Error running OMA standalone at HOG computation step
updated 3.4 years ago by 142k • written 3.4 years ago by ★ 1.1k
1
vote
1
reply
1.2k
views
Answer: A: Predicting Gene Ontology function in OMA for large datasets
3.5 years ago by Adrian Altenhoff ★ 1.1k
3
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1
reply
828
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Answer: A: OMA standalone estimating memory use for bacterial genomes
3.6 years ago by Adrian Altenhoff ★ 1.1k
0
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0
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1.0k
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Answer: A: Alignment scores thresholds with DNA
3.8 years ago by Adrian Altenhoff ★ 1.1k
0
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0
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895
views
Answer: A: can standalone OMA be used on protein fasta (not genome)
4.0 years ago by Adrian Altenhoff ★ 1.1k
0
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0
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885
views
Answer: A: Clusters proteins at each taxonomic rank - OMA
4.0 years ago by Adrian Altenhoff ★ 1.1k
1
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0
replies
774
views
Answer: A: Error, 'sequence 1 is too long' OMA Standalone
4.1 years ago by Adrian Altenhoff ★ 1.1k
2
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1
reply
1.7k
views
Answer: A: OMA error in stage 2 of 2 stage process
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 1.1k
4
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1
reply
1.9k
views
Answer: A: What exactly is OMA doing here ?
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 1.1k
0
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0
replies
2.1k
views
Answer: A: oma stack size error
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 1.1k
2
votes
1
reply
3.1k
views
Answer: A: Gene Gain/loss + Duplication Tree
updated 4.5 years ago by 43k • written 8.5 years ago by ★ 1.1k
1
vote
0
replies
1.2k
views
Answer: A: Mismatch between gene IDs in Map-SeqNum-ID.txt and HierarchicalGroups.orthoxml
5.1 years ago by Adrian Altenhoff ★ 1.1k
2
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1
reply
1.2k
views
Answer: A: Downloading genomes from OmaDB with PyOMADB or OMA API
5.1 years ago by Adrian Altenhoff ★ 1.1k
2
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0
replies
1.1k
views
Answer: A: OMA standalone has not listed splice variants used
5.1 years ago by Adrian Altenhoff ★ 1.1k
2
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1
reply
1.3k
views
Answer: A: OMA gene vs splicing variants in the output
5.1 years ago by Adrian Altenhoff ★ 1.1k
2
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1
reply
1.1k
views
Answer: A: OMA browser: finding exact genome release information
5.1 years ago by Adrian Altenhoff ★ 1.1k
2
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2
replies
1.7k
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Answer: A: OMA Phase 2 stuck in "reading all vs. all" stage for 24 hours
5.1 years ago by Adrian Altenhoff ★ 1.1k
0
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1
reply
1.6k
views
Answer: A: OMA error in reading the all-against-all files
5.1 years ago by Adrian Altenhoff ★ 1.1k
2
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1
reply
1.4k
views
Answer: A: Correct formatting for IDs in OMA standalone .splice files to properly identify
5.2 years ago by Adrian Altenhoff ★ 1.1k
2
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0
replies
979
views
Answer: A: Error, 'Matches sp1/sp2 have been computed\ for different version
5.3 years ago by Adrian Altenhoff ★ 1.1k
1
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1
reply
1.6k
views
Answer: A: Best way running OMA using SLURM
5.3 years ago by Adrian Altenhoff ★ 1.1k
0
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0
replies
1.5k
views
Answer: A: OMA cannot evaluate boolean
5.3 years ago by Adrian Altenhoff ★ 1.1k
1
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1
reply
1.4k
views
Answer: A: Clarification of OMA tree metrics
5.4 years ago by Adrian Altenhoff ★ 1.1k
2
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1
reply
1.5k
views
Answer: A: Download cdna sequences from OMA
5.5 years ago by Adrian Altenhoff ★ 1.1k
3
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1
reply
1.9k
views
Answer: A: Is this warning fatal in OMA
updated 5.7 years ago by 43k • written 8.2 years ago by ★ 1.1k
1
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1
reply
1.4k
views
Answer: A: OMA standalone error
5.8 years ago by Adrian Altenhoff ★ 1.1k
0
votes
0
replies
934
views
Answer: A: Error, (in OrthologousMatrix) values cannot be ordered
6.0 years ago by Adrian Altenhoff ★ 1.1k
0
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0
replies
1.3k
views
Answer: A: OMA output does not match settings
6.1 years ago by Adrian Altenhoff ★ 1.1k
0
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0
replies
1.4k
views
Answer: A: Error ruining OMA "OneMachineParallelInfo"
6.1 years ago by Adrian Altenhoff ★ 1.1k
0
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0
replies
1.7k
views
Answer: A: start OMA run - file.log
6.2 years ago by Adrian Altenhoff ★ 1.1k
2
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1
reply
1.4k
views
Answer: A: Bacterial known pathway - the easiest way to find and download 1:1 orthologs to
6.3 years ago by Adrian Altenhoff ★ 1.1k
72 results • Page 1 of 2
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