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Comment: Comment: PLINK2 selecting variants based on INFO score
15 months ago by chrchang523 10k
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2.5k
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Answer: Answer: VCF to Plink files
15 months ago by chrchang523 10k
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790
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Answer: Answer: drop duplicate insertion deletions in VCF at same position while keeping one
15 months ago by chrchang523 10k
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1.7k
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Comment: Comment: High ref mismatch rate after liftOver from 23andme hg19 to hg38
16 months ago by chrchang523 10k
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1
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4.1k
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Comment: Comment: PLINK --geno and --mind
16 months ago by chrchang523 10k
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1
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4.1k
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Comment: Comment: PLINK --geno and --mind
16 months ago by chrchang523 10k
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4.1k
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Answer: Answer: PLINK --geno and --mind
updated 16 months ago by 43k • written 16 months ago by 10k
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1.3k
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Answer: Answer: How to correct the long variants ID error?
16 months ago by chrchang523 10k
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1.1k
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Comment: Comment: PCA projection with --score plink2.sscore output: what are the ALLELE_CT & NAMED
16 months ago by chrchang523 10k
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1
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1.1k
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Comment: Comment: PCA projection with --score plink2.sscore output: what are the ALLELE_CT & NAMED
16 months ago by chrchang523 10k
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1
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8.2k
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Comment: Comment: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
16 months ago by chrchang523 10k
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1
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8.2k
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Comment: Comment: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
16 months ago by chrchang523 10k
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0
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1.1k
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Comment: Comment: Plink - running too slow.
18 months ago by chrchang523 10k
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1
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1.1k
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Comment: Comment: Plink - running too slow.
18 months ago by chrchang523 10k
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0
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1.3k
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Answer: Answer: How to measure pairwise genetic distance in all samples of a VCF file
18 months ago by chrchang523 10k
4
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2
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1.3k
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Answer: Answer: long view SNPs in vcf file
18 months ago by chrchang523 10k
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0
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613
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Answer: Answer: Calculate missing genotypes per sample with plink2
18 months ago by chrchang523 10k
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0
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1.7k
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Answer: Answer: PLINK1.9 Segmentation fault (core dumped)
18 months ago by chrchang523 10k
1
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0
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1.7k
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Comment: Comment: PLINK1.9 Segmentation fault (core dumped)
18 months ago by chrchang523 10k
1
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0
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27k
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Comment: Comment: Best way to query VCF for specific variants
19 months ago by chrchang523 10k
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0
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468
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Comment: Comment: GWAS with x and y chrosome files plink2
19 months ago by chrchang523 10k
2
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2
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1.3k
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Answer: Answer: PLINK p value returning NA
19 months ago by chrchang523 10k
1
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1
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2.7k
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Comment: Comment: Error in converting vcf file to plink format
19 months ago by chrchang523 10k
2
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1
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1.9k
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Comment: Comment: PLINK - individual variance with the SNPs weights
20 months ago by chrchang523 10k
1
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1
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1.9k
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Comment: Comment: PLINK - individual variance with the SNPs weights
20 months ago by chrchang523 10k
0
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1
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1.9k
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Comment: Comment: PLINK - individual variance with the SNPs weights
20 months ago by chrchang523 10k
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0
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1.4k
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Comment: Comment: plink logistic regression error
20 months ago by chrchang523 10k
1
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1
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1.4k
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Comment: Comment: plink logistic regression error
20 months ago by chrchang523 10k
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1
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1.4k
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Comment: Comment: plink logistic regression error
20 months ago by chrchang523 10k
2
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0
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821
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Answer: Answer: Better splitting of mutliallelic sites then bcftools norm --m-any
20 months ago by chrchang523 10k
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1
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871
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Answer: Answer: plink2 fails to calculate allele frequency
20 months ago by chrchang523 10k
1
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1
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1.4k
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Comment: Comment: SNP array plink to VCF validation issue
21 months ago by chrchang523 10k
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1
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1.4k
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Comment: Comment: SNP array plink to VCF validation issue
21 months ago by chrchang523 10k
1
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1
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985
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Answer: Answer: Using a phenotype file with several phenotype columns- PLINK2
21 months ago by chrchang523 10k
1
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0
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2.3k
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Comment: Comment: Plink : Variant names are limited to 16000 characters
21 months ago by chrchang523 10k
3
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1
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1.4k
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Answer: Answer: SNP array plink to VCF validation issue
21 months ago by chrchang523 10k
1
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0
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2.3k
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Comment: Comment: Plink : Variant names are limited to 16000 characters
21 months ago by chrchang523 10k
1
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2
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2.3k
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Answer: Answer: Plink : Variant names are limited to 16000 characters
21 months ago by chrchang523 10k
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1
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2.2k
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Comment: Comment: High proportion of non-biallelic SNPs in dbSNP 155 vs 144
21 months ago by chrchang523 10k
1
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1
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2.2k
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Answer: Answer: High proportion of non-biallelic SNPs in dbSNP 155 vs 144
21 months ago by chrchang523 10k
1
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1
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2.9k
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Answer: Answer: set-all-var-ids misuse in plink 2.0
21 months ago by chrchang523 10k
2
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2
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1.1k
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Answer: Answer: Changing from "rs" to "chr_pos_ref_alt"
21 months ago by chrchang523 10k
0
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0
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1.6k
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Comment: Comment: Plink: .vcf to .ped issue (problem with polyploidy?)
21 months ago by chrchang523 10k
2
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1
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649
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Answer: Answer: PRS with multiple panels of SNP weights
21 months ago by chrchang523 10k
1
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1
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1.3k
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Comment: Comment: updating .bim with new rsids
22 months ago by chrchang523 10k
1
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0
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1.3k
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Comment: Comment: updating .bim with new rsids
22 months ago by chrchang523 10k
1
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1
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1.3k
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Answer: Answer: updating .bim with new rsids
22 months ago by chrchang523 10k
2
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0
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3.7k
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Comment: Comment: plink2 cannot make bed file
22 months ago by chrchang523 10k
1
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1
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672
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Answer: Answer: plink update .bim question
22 months ago by chrchang523 10k
0
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0
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608
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Comment: Comment: Plink (1.07 and 1.09) runs and stops after reading map
22 months ago by chrchang523 10k
896 results • Page 2 of 18
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