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3
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1
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8.7k
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Answer: A: Converting TPM to FPKM
7.0 years ago by karl.stamm 4.1k
3
votes
2
replies
4.0k
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Answer: A: How to programmatically retrieve the p-value of the slope of a linear regression
7.2 years ago by karl.stamm 4.1k
1
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0
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2.5k
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Answer: A: How I can compute Pearson or Spearman correlation in R?
7.2 years ago by karl.stamm 4.1k
0
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1
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6.7k
views
Answer: A: How to look up GO terms associated to a certain organism?
7.3 years ago by karl.stamm 4.1k
1
vote
0
replies
5.2k
views
Answer: A: BLAST Ring Image Generator (BRIG) error
7.4 years ago by karl.stamm 4.1k
3
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1
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2.9k
views
Answer: A: Create a picture from a Bam file at specific position
7.4 years ago by karl.stamm 4.1k
0
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0
replies
2.1k
views
Answer: A: PWMs and FDR
7.5 years ago by karl.stamm 4.1k
1
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1
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2.0k
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Answer: A: about computer memory and mpileup files
7.6 years ago by karl.stamm 4.1k
0
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1
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6.5k
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Answer: A: PCA plot- R/Bioconductor-Deseq2
7.7 years ago by karl.stamm 4.1k
0
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2
replies
5.3k
views
Answer: A: randomly subsampling a bam file three times
7.8 years ago by karl.stamm 4.1k
0
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1
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2.3k
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Answer: A: Significance of GO similarity
7.8 years ago by karl.stamm 4.1k
1
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0
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4.0k
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Answer: A: Can Affymetrix HG-U133 Plus 2.0 test LncRNA?
7.8 years ago by karl.stamm 4.1k
0
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1
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3.3k
views
Answer: A: question about API for SNPs
7.9 years ago by karl.stamm 4.1k
1
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0
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2.4k
views
Answer: A: Is it possible to get FASTA from .CEL or .DAT files?
7.9 years ago by karl.stamm 4.1k
0
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0
replies
1.8k
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Answer: A: Depth null but GQ high
8.1 years ago by karl.stamm 4.1k
0
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0
replies
1.7k
views
Answer: A: Extract rows if 2 column values has 21 in between
8.1 years ago by karl.stamm 4.1k
3
votes
1
reply
2.1k
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Answer: A: HTSeq-count output files sizes are always 10mb
8.1 years ago by karl.stamm 4.1k
8
votes
1
reply
2.0k
views
Answer: A: Seeking for Scientific Crticism
8.1 years ago by karl.stamm 4.1k
1
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0
replies
1.6k
views
Answer: A: gene expression candidate for RT-PCR
8.3 years ago by karl.stamm 4.1k
2
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0
replies
2.1k
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Answer: A: different e-value from linux standalone VS blast website
8.4 years ago by karl.stamm 4.1k
1
vote
1
reply
4.5k
views
Answer: Answer: Running BWA parallel on 1000 samples
updated 20 months ago by 43k • written 8.6 years ago by 4.1k
0
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2
replies
5.0k
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Answer: A: PCR Primer Design - Specificity
8.6 years ago by karl.stamm 4.1k
1
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1
reply
2.6k
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Answer: Answer: Disproportionate Amount of Up-regulated Genes
updated 20 months ago by 43k • written 8.6 years ago by 4.1k
1
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0
replies
6.3k
views
Answer: Answer: Many overrepresented sequences in RNA-seq data. Should them be trimmed out?
updated 20 months ago by 43k • written 8.6 years ago by 4.1k
1
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0
replies
4.6k
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Answer: A: Forge a BSgenome data package
8.6 years ago by karl.stamm 4.1k
0
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0
replies
1.4k
views
Answer: Answer: Which experiment group is an imputed SNP associated with?
updated 20 months ago by 43k • written 8.6 years ago by 4.1k
1
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1
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2.1k
views
Answer: A: Help with DEseq2 design matrix and DE expression analysis
8.6 years ago by karl.stamm 4.1k
0
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0
replies
1.5k
views
Answer: Answer: Why searching using suffix array is so slow in human genome?
updated 20 months ago by 43k • written 8.6 years ago by 4.1k
0
votes
0
replies
1.7k
views
Answer: A: How to get gemini to display only the column headers of a database
8.7 years ago by karl.stamm 4.1k
1
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1
reply
4.6k
views
Answer: Answer: Transcriptional repressors and transcriptional activators
updated 19 months ago by 43k • written 8.8 years ago by 4.1k
1
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1
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1.6k
views
Answer: Answer: Variant in earlier builds of 1000 genomes not found in later builds
updated 18 months ago by 43k • written 8.8 years ago by 4.1k
0
votes
0
replies
4.3k
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Answer: Answer: ERROR: Stopping as there are no SNPs left for analysis
updated 18 months ago by 43k • written 8.8 years ago by 4.1k
0
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1
reply
6.7k
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Answer: A: Pre-processing MiSeq Paired End data
8.8 years ago by karl.stamm 4.1k
0
votes
0
replies
7.4k
views
Answer: Answer: install qvalue in R
updated 2.5 years ago by 43k • written 8.8 years ago by 4.1k
1
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1
reply
2.9k
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Answer: Answer: NIPT data analysis - TruSeq Indexed Adapter sequence reads and GC bias
updated 17 months ago by 43k • written 8.8 years ago by 4.1k
0
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1
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2.8k
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Answer: Answer: overlap gene and exon with bed file
updated 17 months ago by 43k • written 8.8 years ago by 4.1k
0
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1
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2.7k
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Answer: Answer: Zero Counts for many genes in 1 replicate, why?
updated 17 months ago by 43k • written 8.9 years ago by 4.1k
4
votes
0
replies
4.4k
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Answer: Answer: mm9 gene names to mm10
updated 16 months ago by 43k • written 8.9 years ago by 4.1k
2
votes
0
replies
5.4k
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Answer: Answer: Cuffdiff: 0 expression and NOTEST
updated 16 months ago by 43k • written 8.9 years ago by 4.1k
5
votes
0
replies
2.5k
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Answer: Answer: Two different methods for calculating p-value?!
updated 16 months ago by 43k • written 8.9 years ago by 4.1k
1
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1
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1.7k
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Answer: Answer: How to select checkbox with specific names on web page (the TCGA data)
updated 16 months ago by 43k • written 8.9 years ago by 4.1k
1
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0
replies
4.1k
views
Answer: A: Why cufflinks does not report raw read count anymore? Which version of it do rep
9.1 years ago by karl.stamm 4.1k
2
votes
1
reply
6.9k
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Answer: Answer: K-means for non-spherical (non-globular) clusters
updated 23 months ago by 43k • written 9.1 years ago by 4.1k
2
votes
0
replies
3.9k
views
Answer: Answer: Proteins without genes ? Is that even possible ?
updated 23 months ago by 43k • written 9.1 years ago by 4.1k
3
votes
1
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2.2k
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Answer: Answer: No reference bias?!
updated 23 months ago by 43k • written 9.1 years ago by 4.1k
9
votes
2
replies
45k
views
Answer: Answer: Using transcripts per million (TPM)
updated 24 months ago by 43k • written 9.2 years ago by 4.1k
0
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0
replies
2.6k
views
Answer: Answer: any tools for annotating "canonical splice site variants"
updated 2.0 years ago by 43k • written 9.2 years ago by 4.1k
0
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0
replies
1.5k
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Answer: Answer: Reference genes for finding CNVs
updated 2.0 years ago by 43k • written 9.2 years ago by 4.1k
6
votes
2
replies
2.9k
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Answer: Answer: Correlated standard errors in DESeq2
updated 2.0 years ago by 43k • written 9.2 years ago by 4.1k
2
votes
1
reply
12k
views
Answer: Answer: RNA-seq differential expression analysis, which aligner to choose between BWA/to
updated 2.1 years ago by 43k • written 9.2 years ago by 4.1k
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