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Comment:
Comment: How to make contrasts to find genes DE in one experimental group but NOT in othe
17 months ago by
bkleiboeker
▴ 370
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How to make contrasts to find genes DE in one experimental group but NOT in others?
edgeR
limma
matrix
design
R
updated 16 months ago by
Gordon Smyth
★ 7.2k • written 17 months ago by
bkleiboeker
▴ 370
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0
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Comment:
Comment: How to make contrasts to find genes DE in one experimental group but NOT in othe
17 months ago by
bkleiboeker
▴ 370
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0
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1.1k
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Comment:
Comment: Strange results from limma output
17 months ago by
bkleiboeker
▴ 370
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752
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Comment:
Comment: warning when installing "AnnotationDbi"
17 months ago by
bkleiboeker
▴ 370
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633
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Comment:
Comment: qPCR assay Triplicate Ct SD
18 months ago by
bkleiboeker
▴ 370
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1.3k
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Comment:
Comment: Comparing multiple groups in edgeR
18 months ago by
bkleiboeker
▴ 370
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1.0k
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Answer:
Answer: Pan-cancer RNA-seq data normalization
18 months ago by
bkleiboeker
▴ 370
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911
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Comment:
Comment: Design matrix for microarray experiment with covariates, cofactors, multiple fa
22 months ago by
bkleiboeker
▴ 370
2
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3
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911
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Design matrix for microarray experiment with covariates, cofactors, multiple factors, and one treatment?
mircoarray
R
matrix
design
limma
updated 22 months ago by
LChart
3.9k • written 22 months ago by
bkleiboeker
▴ 370
0
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3.3k
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Answer:
Answer: What is the Sleuth intercept and how can Sleuth be used when you have >2 treatme
2.6 years ago by
bkleiboeker
▴ 370
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0
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2.1k
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Answer:
Answer: RNA-seq gene list - HOMER Gene based analysis
2.9 years ago by
bkleiboeker
▴ 370
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1.5k
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Comment:
C: Am I unnecessarily 'missing' a high number of true-positive DE genes? Or do I ju
3.3 years ago by
bkleiboeker
▴ 370
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1.5k
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Comment:
C: Am I unnecessarily 'missing' a high number of true-positive DE genes? Or do I ju
3.3 years ago by
bkleiboeker
▴ 370
7
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7
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1.5k
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Am I unnecessarily 'missing' a high number of true-positive DE genes? Or do I just not understand the statistics?
RNA-Seq
R
edgeR
updated 3.3 years ago by
Ram
43k • written 3.3 years ago by
bkleiboeker
▴ 370
0
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1
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1.5k
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Comment:
C: Am I unnecessarily 'missing' a high number of true-positive DE genes? Or do I ju
3.3 years ago by
bkleiboeker
▴ 370
0
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0
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752
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Answer:
A: Matching gene ids in R
3.4 years ago by
bkleiboeker
▴ 370
3
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2.0k
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Answer:
A: How to add gene names to DGEList and convert to csv? gro-seq groHMM
3.4 years ago by
bkleiboeker
▴ 370
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