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5
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0
replies
1.4k
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Answer: Answer: How to Remove Sample Names from Heatmap
13 months ago by DareDevil ★ 4.3k
4
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1
reply
1.4k
views
Comment: Comment: How to Remove Sample Names from Heatmap
13 months ago by DareDevil ★ 4.3k
4
votes
0
replies
997
views
Comment: Comment: How to deal with the probe id mapping to multiple gene ids?
13 months ago by DareDevil ★ 4.3k
2
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0
replies
997
views
Comment: Comment: How to deal with the probe id mapping to multiple gene ids?
13 months ago by DareDevil ★ 4.3k
11
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3
replies
997
views
How to deal with the probe id mapping to multiple gene ids?
match microarray affymetrix probe gene
13 months ago by DareDevil ★ 4.3k
6
votes
3
replies
773
views
Informations for gene summary are missing in eutils api of NCBI?
NCBI esummary eutils Gene
updated 14 months ago by ▴ 720 • written 14 months ago by ★ 4.3k
0
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0
replies
773
views
Comment: Comment: Informations for gene summary are missing in eutils api of NCBI?
14 months ago by DareDevil ★ 4.3k
5
votes
1
reply
537
views
How do I retrieve withdrawn or replaced gene id for homosapiens from ncbi gene ?
NCBI Eutils
updated 14 months ago by 43k • written 14 months ago by ★ 4.3k
2
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0
replies
3.0k
views
Comment: Comment: Detection P-value in illumina data
14 months ago by DareDevil ★ 4.3k
2
votes
0
replies
3.4k
views
Answer: Answer: Graph using corrplot for multiple sets of data
15 months ago by DareDevil ★ 4.3k
3
votes
3
replies
2.9k
views
Tutorial: Generating count matrix for STAR counts in GDC v32.0 for RNA-Seq
GDC TCGABiolinks STAR
updated 15 months ago by 43k • written 2.1 years ago by ★ 4.3k
4
votes
0
replies
385
views
How to identify the batch informations from the sample ID?
batch-correction TCGAbatch DESeq2 TCGA
updated 15 months ago by 43k • written 15 months ago by ★ 4.3k
1
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0
replies
805
views
Comment: Comment: Gene ontology vs Gene set enrichment
17 months ago by DareDevil ★ 4.3k
1
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0
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2.7k
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Comment: Comment: Can transcripts per million be fed into edgeR and voom?
17 months ago by DareDevil ★ 4.3k
2
votes
0
replies
8.2k
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Comment: Comment: CPM or TPM in GSEA analysis
17 months ago by DareDevil ★ 4.3k
4
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1
reply
8.2k
views
Comment: Comment: CPM or TPM in GSEA analysis
17 months ago by DareDevil ★ 4.3k
9
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1
reply
8.2k
views
Answer: Answer: CPM or TPM in GSEA analysis
17 months ago by DareDevil ★ 4.3k
1
vote
0
replies
878
views
Comment: Comment: Questions about supplementary file contents of a GEO dataset
17 months ago by DareDevil ★ 4.3k
3
votes
0
replies
3.0k
views
Answer: Answer: strandness of paired-end data
18 months ago by DareDevil ★ 4.3k
1
vote
0
replies
1.7k
views
Comment: Comment: RSeQC confusing output - Half fails to determine, half is reverse strand
18 months ago by DareDevil ★ 4.3k
1
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0
replies
3.2k
views
Comment: Comment: CIBERSORT input file for RNA-Seq data
18 months ago by DareDevil ★ 4.3k
0
votes
0
replies
937
views
Comment: Comment: How to get per sample read depth from VCF with no DP field
18 months ago by DareDevil ★ 4.3k
5
votes
0
replies
12k
views
Answer: Answer: combining quantification (featureCounts) result files into a single dataset
19 months ago by DareDevil ★ 4.3k
2
votes
0
replies
7.5k
views
Answer: Answer: Featurecounts to DESEq2 - How to merge biological replicates?
19 months ago by DareDevil ★ 4.3k
2
votes
0
replies
2.1k
views
Answer: Answer: STAR alignment in a full directory
19 months ago by DareDevil ★ 4.3k
2
votes
0
replies
4.5k
views
Answer: Answer: How to run STAR with multiple files
19 months ago by DareDevil ★ 4.3k
4
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0
replies
18k
views
Answer: Answer: TrimGalore! on multiple paired fastq files
19 months ago by DareDevil ★ 4.3k
0
votes
1
reply
1.9k
views
Comment: Comment: Problem creating new conda environment
20 months ago by DareDevil ★ 4.3k
2
votes
1
reply
16k
views
Comment: Comment: How to do FPKM differential analysis?
20 months ago by DareDevil ★ 4.3k
1
vote
0
replies
9.7k
views
Comment: Comment: How to change color of rownames display in pheatmap
21 months ago by DareDevil ★ 4.3k
3
votes
2
replies
1.2k
views
A USER ERROR has occurred: Positive training model failed to converge.
gatk vcf max-gaussians
updated 21 months ago by • 0 • written 3.3 years ago by ★ 4.3k
1
vote
0
replies
839
views
Comment: Comment: The difference of RNA-seq data between TCGA and ENCODE
22 months ago by DareDevil ★ 4.3k
1
vote
1
reply
839
views
Comment: Comment: The difference of RNA-seq data between TCGA and ENCODE
22 months ago by DareDevil ★ 4.3k
3
votes
1
reply
7.2k
views
Comment: Comment: TCGA transcriptome data to R (DESeq2)
23 months ago by DareDevil ★ 4.3k
2
votes
0
replies
6.4k
views
Comment: Comment: How to extract count matrix from TCGAbiolinks using STAR-Counts
2.1 years ago by DareDevil ★ 4.3k
5
votes
1
reply
1.2k
views
Answer: Answer: RNA Seq HTSeq download GDC portal
2.1 years ago by DareDevil ★ 4.3k
1
vote
1
reply
7.2k
views
Comment: Comment: TCGA transcriptome data to R (DESeq2)
2.1 years ago by DareDevil ★ 4.3k
2
votes
0
replies
32k
views
Answer: Answer: Mapping Mouse gene names to Human gene names
2.2 years ago by DareDevil ★ 4.3k
22
votes
2
replies
1.6k
views
How do we deal with `MIXED` type variants in VQSR mode of Variant filtering ?
VQSR GATK VariantRecalibrator
2.2 years ago by DareDevil ★ 4.3k
6
votes
0
replies
1.6k
views
Answer: Answer: How do we deal with `MIXED` type variants in VQSR mode of Variant filtering ?
2.2 years ago by DareDevil ★ 4.3k
2
votes
0
replies
6.9k
views
Answer: Answer: Running featureCounts separately for each sample and merging results
2.3 years ago by DareDevil ★ 4.3k
5
votes
0
replies
6.5k
views
Answer: Answer: Split multiallelic SNPs to biallelic from vcf
2.3 years ago by DareDevil ★ 4.3k
3
votes
0
replies
4.7k
views
Comment: Comment: bcftools multiallelic split not working
2.3 years ago by DareDevil ★ 4.3k
2
votes
0
replies
458
views
How is the pvalue in cibersort calculated?
pvalue cibersort
2.4 years ago by DareDevil ★ 4.3k
2
votes
0
replies
17k
views
Comment: Comment: STAR align multiple files
2.7 years ago by DareDevil ★ 4.3k
1
vote
0
replies
4.6k
views
Comment: Comment: Aligning Multiple paired end files together
2.7 years ago by DareDevil ★ 4.3k
1
vote
1
reply
1.0k
views
Answer: Answer: METABRIC sample IDs
2.8 years ago by DareDevil ★ 4.3k
3
votes
1
reply
825
views
How to perform differential expression analysis of metabric data obtained from METABRIC?
DEseq2 cbioportal EdgeR limma
updated 2.9 years ago by ★ 1.6k • written 2.9 years ago by ★ 4.3k
0
votes
0
replies
741
views
Comment: Comment: How do I call compound hetrozygosity from multiple trios cohort?
2.9 years ago by DareDevil ★ 4.3k
2
votes
2
replies
741
views
How do I call compound hetrozygosity from multiple trios cohort?
ped gatk trio heterozygosity compound vcf
2.9 years ago by DareDevil ★ 4.3k
224 results • Page 2 of 5
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