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2
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716
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Answer: A: Python base versus specific environments
3.8 years ago by Devon Ryan 104k
2
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1
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4.4k
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Answer: A: Limma:Coefficients not estimable, please help
3.8 years ago by Devon Ryan 104k
5
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2
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2.7k
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Answer: A: SizeFactors for BAM normalization
3.8 years ago by Devon Ryan 104k
6
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0
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834
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Answer: A: How to make it significant
3.8 years ago by Devon Ryan 104k
2
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1
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15k
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Answer: A: type='apeglm' shrinkage only for use with 'coef'
3.8 years ago by Devon Ryan 104k
3
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0
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1.5k
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Answer: A: Want to create a new Index file for BAM using SAMTOOLS. Do I need to sort the de
3.9 years ago by Devon Ryan 104k
0
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2
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2.3k
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Answer: A: ATAC-Seq: Filter bams for differential analysis or not
3.9 years ago by Devon Ryan 104k
3
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0
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792
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Answer: A: deeptools computeGCbias: what are the columns in the GCbiasFrequenciesFile?
3.9 years ago by Devon Ryan 104k
4
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1
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3.4k
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Answer: C: interpreting GC-bias compute and correct results from DeepTools
3.9 years ago by Devon Ryan 104k
4
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2
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2.6k
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Answer: C: <DESeqDataSet>[i,] index out of bounds - subsetting DESeqDataSet
3.9 years ago by Devon Ryan 104k
2
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1
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2.0k
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Answer: A: conda installation error in hypo
3.9 years ago by Devon Ryan 104k
1
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0
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2.2k
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Answer: A: Deeptools heatmap analysis - graphing unique clusters of heatmap
4.0 years ago by Devon Ryan 104k
2
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1
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2.6k
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Answer: A: When should one be concerned about the CG content in RNA-seq experiment?
4.1 years ago by Devon Ryan 104k
1
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0
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1.3k
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Answer: A: How to interpret the exon numbering for minus strand?
4.1 years ago by Devon Ryan 104k
3
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2
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1.9k
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Answer: A: PCR duplicates in RRBS data
4.1 years ago by Devon Ryan 104k
1
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1
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1.1k
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Answer: A: Which DE method perform better for small number of genes
4.1 years ago by Devon Ryan 104k
2
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0
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1.3k
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Answer: A: how to do normalization in edgeR
4.1 years ago by Devon Ryan 104k
5
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1
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7.3k
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Answer: A: Remove supplementary alignments from a bam file
4.1 years ago by Devon Ryan 104k
1
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0
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1.1k
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Answer: A: How to upload a custom genome build at Galaxy
updated 4.1 years ago by 82k • written 4.1 years ago by 104k
1
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1
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2.3k
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Answer: C: Snakemake - Missing MissingInputException in line 20: Missing input files for ru
4.1 years ago by Devon Ryan 104k
2
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1
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4.2k
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Answer: A: Normalization of ATAC SEQ data for the proper deeptools heatmap
4.2 years ago by Devon Ryan 104k
0
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0
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528
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Answer: A: legal issues about running the analysis on the cloud
4.2 years ago by Devon Ryan 104k
2
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0
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3.5k
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Answer: A: What is the difference between bed files from bigWig or bam, and bed files of na
4.2 years ago by Devon Ryan 104k
2
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1
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792
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Answer: A: Can I replace the single end sequenced sample with the failed pair end sequenced
4.2 years ago by Devon Ryan 104k
7
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2
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40k
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Answer: A: Running and Analyzing fastqc on multiple fastq files
updated 4.2 years ago by 43k • written 9.0 years ago by 104k
3
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0
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903
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Answer: A: How to covert RKPM into absolute quantification?
4.2 years ago by Devon Ryan 104k
1
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1
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1.8k
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Answer: A: MPI/multi-threading in salmon quasi-mapping
4.2 years ago by Devon Ryan 104k
0
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0
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1.0k
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Answer: A: Interaction Design and continous variable In EdgeR
4.2 years ago by Devon Ryan 104k
0
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1
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639
views
Answer: A: fixing human ref genome random access memory
4.2 years ago by Devon Ryan 104k
3
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1
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853
views
Answer: A: what is the definition of "cell barcode collapsing"
4.2 years ago by Devon Ryan 104k
1
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0
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751
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Answer: C: Software for analysing mass spectrometry data on Linux
4.2 years ago by Devon Ryan 104k
0
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1
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1.5k
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Answer: A: How to correctly generate alignment Stat in RNA-Seq
4.2 years ago by Devon Ryan 104k
1
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1
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1.3k
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Answer: A: Correlation vs differential expression testing
4.2 years ago by Devon Ryan 104k
4
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0
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1.8k
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Answer: A: Salmon annotation of transcripts in quasi-mapping step
4.3 years ago by Devon Ryan 104k
2
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1
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10.0k
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Answer: C: Is a simple Wilcoxon rank sum test good enough to identify differentially expres
4.3 years ago by Devon Ryan 104k
7
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2
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1.4k
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Answer: A: Kallisto in snakePipes instead of salmon
4.3 years ago by Devon Ryan 104k
1
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1
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2.0k
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Answer: A: RNA-Seq pipeline fails during STAR alignment
4.3 years ago by Devon Ryan 104k
2
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2
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5.5k
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Answer: A: Is removing rRNA a necessary step in RNA-seq?
4.3 years ago by Devon Ryan 104k
0
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0
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2.2k
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Answer: A: MultiQC on fastQC files generated by Galaxy
4.3 years ago by Devon Ryan 104k
2
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1
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4.8k
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Answer: A: snakemake rule input from multiple directories and proceed them separatly
4.3 years ago by Devon Ryan 104k
0
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0
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1.2k
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Answer: A: normalization methods for scRNA-seq and RNA-seq in specific cases of increased g
4.3 years ago by Devon Ryan 104k
2
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1
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1.8k
views
Answer: A: how to extract intron coordinates (in bed) from bam
4.3 years ago by Devon Ryan 104k
0
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1
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1.0k
views
Answer: A: In PCA on RNA-Seq data, what does Gaussian distribution refer to?
4.3 years ago by Devon Ryan 104k
1
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2
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941
views
Answer: C: chip seq peaks are very long
4.3 years ago by Devon Ryan 104k
1
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0
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2.2k
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Answer: A: Functions in DESeq2?
updated 4.3 years ago by 43k • written 9.9 years ago by 104k
0
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1
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5.3k
views
Answer: A: cn.mops - Error in if (n > 512) n <- 2^ceiling(log2(n))
updated 4.3 years ago by 43k • written 9.9 years ago by 104k
4
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0
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1.7k
views
Answer: A: Reference Sequence Accuracy
updated 4.3 years ago by 43k • written 9.9 years ago by 104k
0
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1
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7.9k
views
Answer: A: What means negative values in LogCPM Smear Plot - edgeR ?
updated 4.3 years ago by 43k • written 8.3 years ago by 104k
7
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4
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14k
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Answer: C: Extract gene coordinates from GTF
updated 4.3 years ago by 43k • written 9.9 years ago by 104k
2
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1
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4.3k
views
Answer: A: deletion in intron region, any consequences?
updated 4.3 years ago by 43k • written 9.9 years ago by 104k
2,882 results • Page 2 of 58
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