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Comment: Comment: Performance metrics of aligners and variant callers
3.1 years ago by Devon Ryan 104k
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1
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4.2k
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Comment: Comment: Multiqc
3.1 years ago by Devon Ryan 104k
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2.9k
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Comment: Comment: Deeptools, ComputeMatrix and plotProfile
3.1 years ago by Devon Ryan 104k
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811
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Comment: Comment: Does GISAID fasta files contain spike protein or whole genome sequence?
3.1 years ago by Devon Ryan 104k
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1
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3.8k
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Comment: Comment: DESeq2 multi-factor design
3.1 years ago by Devon Ryan 104k
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1
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2.3k
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Comment: Comment: ATAC-Seq: Filter bams for differential analysis or not
3.1 years ago by Devon Ryan 104k
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1
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865
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Comment: Comment: Suggestion for modelling transcriptomics analysis
3.1 years ago by Devon Ryan 104k
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4.1k
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Comment: Comment: Converting beta value to M value (when beta=1)
3.1 years ago by Devon Ryan 104k
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1
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965
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Comment: C: Lmfit function, to analyse differential expressions, not coming from arrays
3.2 years ago by Devon Ryan 104k
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1
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1.2k
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Comment: C: A layman trying to understand what a FASTA file is
3.2 years ago by Devon Ryan 104k
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7.3k
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Comment: C: Remove supplementary alignments from a bam file
3.2 years ago by Devon Ryan 104k
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7.9k
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Comment: C: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
3.2 years ago by Devon Ryan 104k
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1
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7.9k
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Comment: C: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
3.2 years ago by Devon Ryan 104k
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4.4k
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Comment: C: bamCoverage bin size for narrow and broad histone marks
3.2 years ago by Devon Ryan 104k
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7.5k
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Comment: C: The meaning of differentially expressed (DE) gene level
3.2 years ago by Devon Ryan 104k
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880
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Comment: C: Calculating fold change...CONFUSION
3.2 years ago by Devon Ryan 104k
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56k
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Comment: C: How To Write Data In A Granges Object To A Bed File.
updated 3.3 years ago by 43k • written 10.4 years ago by 104k
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3.0k
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Comment: C: What are those black lines in my heatmap?
3.3 years ago by Devon Ryan 104k
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3.8k
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Comment: C: BigWig from ensembl assembly to UCSC session
3.3 years ago by Devon Ryan 104k
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1
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3.8k
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Comment: C: BigWig from ensembl assembly to UCSC session
3.3 years ago by Devon Ryan 104k
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9.8k
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Comment: C: how is obtained the BED score values (the 5th column of the bed files) in BED fi
3.3 years ago by Devon Ryan 104k
2
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1
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1.6k
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Comment: C: hisat2 alignment error
3.4 years ago by Devon Ryan 104k
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1
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2.4k
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Comment: C: Extracting Methylation Data
3.4 years ago by Devon Ryan 104k
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1
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1.0k
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Comment: C: Is there a stagewise testing procedure for DESeq2?
3.5 years ago by Devon Ryan 104k
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2
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2.6k
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Comment: C: How to count the number of codons in a frame or order using the equation?
3.5 years ago by Devon Ryan 104k
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0
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2.7k
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Comment: C: RNAseq bad PCA, a differential expression analysis killer ?
3.5 years ago by Devon Ryan 104k
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1
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2.7k
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Comment: C: RNAseq bad PCA, a differential expression analysis killer ?
3.5 years ago by Devon Ryan 104k
2
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1
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7.5k
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Comment: C: Deseq2 with one factor and multiple levels
3.5 years ago by Devon Ryan 104k
2
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1
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7.5k
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Comment: C: Deseq2 with one factor and multiple levels
3.5 years ago by Devon Ryan 104k
1
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0
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4.2k
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Comment: C: Doubt on removing duplicates on amplicon sequencing data
3.6 years ago by Devon Ryan 104k
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0
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4.2k
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Comment: C: deepTools computeMatrix need at least one array to concatenate error
3.6 years ago by Devon Ryan 104k
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5.0k
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Comment: C: Samtool (Faidx) - Signal 11 Termination Error
updated 3.6 years ago by 43k • written 10.8 years ago by 104k
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964
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Comment: C: Plot a dotted line to the start of the regions in computeMatrix, deepTools
3.6 years ago by Devon Ryan 104k
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2.2k
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Comment: C: Comparing input read subtracted ChIP-read profiles using Deeptools v3.4.3
3.6 years ago by Devon Ryan 104k
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1
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9.2k
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Comment: C: GTF/GFF file for feature count
3.6 years ago by Devon Ryan 104k
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0
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1.7k
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Comment: C: Deeptools correlation plot: between RNAseq and H3K27ac ChIPseq
3.7 years ago by Devon Ryan 104k
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1
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1.7k
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Comment: C: Deeptools correlation plot: between RNAseq and H3K27ac ChIPseq
3.7 years ago by Devon Ryan 104k
2
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1.1k
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Comment: C: what the mean of Genomic content
3.7 years ago by Devon Ryan 104k
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2.3k
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Comment: C: What statistical test for CpG DMR ?
3.7 years ago by Devon Ryan 104k
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0
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3.4k
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Comment: C: DiffBind - normalization methods with biologically-relevant differences in signa
3.7 years ago by Devon Ryan 104k
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0
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1.5k
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Comment: C: help with segmentation fault deeptools
3.7 years ago by Devon Ryan 104k
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1
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1.5k
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Comment: C: help with segmentation fault deeptools
3.7 years ago by Devon Ryan 104k
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0
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5.3k
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Comment: C: What is difference between bulk RNAseq and mRNAseq?
3.7 years ago by Devon Ryan 104k
1
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0
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17k
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Comment: C: Benjamini+ Hochberg multiple testing p.adjust R
3.7 years ago by Devon Ryan 104k
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0
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4.2k
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Comment: C: Calculating fold change
3.7 years ago by Devon Ryan 104k
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1
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5.3k
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Comment: C: What is difference between bulk RNAseq and mRNAseq?
3.7 years ago by Devon Ryan 104k
1
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0
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2.5k
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Comment: C: Samtools merge BAM files using snakemake
3.7 years ago by Devon Ryan 104k
1
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1
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2.3k
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Comment: C: deepTools NPZ to PCA plot with modifications
3.8 years ago by Devon Ryan 104k
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1
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2.5k
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Comment: C: Samtools merge BAM files using snakemake
3.8 years ago by Devon Ryan 104k
1
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2
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2.5k
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Comment: C: Samtools merge BAM files using snakemake
3.8 years ago by Devon Ryan 104k
7,141 results • Page 2 of 143
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