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How to create a proper design matrix/contrast matrix for methylation 850k analysis in limma?
850k methylation analysis R limma design matrix
updated 2.9 years ago by • 0 • written 4.3 years ago by ▴ 120
2
votes
2
replies
2.4k
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Question regarding TCGA and TCGAbiolinks --> RNAseq data as HTseq-Counts, FPKM, FPKM-UQ
RNAseq FPKM-UQ FPKM TCGAbiolinks TCGA
3.1 years ago by mario.red8976 ▴ 120
0
votes
3
replies
575
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Problem installing bioconductor package 'sesameData' (R 4.0, Bioc 3.12)
R bioconductor sesameData sesame TCGAbiolinks
3.1 years ago by mario.red8976 ▴ 120
2
votes
5
replies
2.0k
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RnBeads error running rnb.run.dj()
ngs rnbeads methylation
updated 13 months ago by 43k • written 3.2 years ago by ▴ 120
0
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3
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2.0k
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How to export molecular action between nodes from String PPI network?
PPI network string systems-biology
updated 10 months ago by 43k • written 3.8 years ago by ▴ 120
2
votes
8
replies
5.6k
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How to do Disease-Free survival analysis with TCGA data ??
tcga survival analysis disease-free survival R
updated 22 months ago by 43k • written 4.1 years ago by ▴ 120
2
votes
4
replies
1.8k
views
What is the best way to analyze and enrich a list of DE genes from RNAseq?
R pathways enrichment RNA-Seq
updated 11 months ago by 43k • written 4.1 years ago by ▴ 120
2
votes
4
replies
1.6k
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How to check for the presence/absence of unique rows in two different matrices?
R RStudio matrix
updated 11 months ago by 43k • written 4.2 years ago by ▴ 120
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