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answers
3
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1
reply
348
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Answer:
Answer: Best genome browser for manual curation of gene structure(s)?
28 days ago by
cmdcolin
★ 3.8k
0
votes
1
reply
536
views
Answer:
Answer: Is it possible to set different tracks to the same scale in JBrowse
29 days ago by
cmdcolin
★ 3.8k
2
votes
0
replies
287
views
Answer:
Answer: gene alignment (microsynteny)
10 weeks ago by
cmdcolin
★ 3.8k
0
votes
1
reply
615
views
Answer:
Answer: hg38 goldenPath cpgIsland is down?
3 months ago by
cmdcolin
★ 3.8k
2
votes
0
replies
369
views
Answer:
Answer: Impossible gene fusion annotations
3 months ago by
cmdcolin
★ 3.8k
0
votes
0
replies
469
views
Answer:
Answer: Bacterial Synteny Tools
3 months ago by
cmdcolin
★ 3.8k
1
vote
2
replies
558
views
Answer:
Answer: How to draw genome atlas on Linux?
3 months ago by
cmdcolin
★ 3.8k
2
votes
1
reply
980
views
Answer:
Answer: Where can I find a vcf file with individuals in it, that have a specific disease
4 months ago by
cmdcolin
★ 3.8k
2
votes
1
reply
1.3k
views
Answer:
Answer: extract sequence from genome by region
4 months ago by
cmdcolin
★ 3.8k
2
votes
0
replies
1.8k
views
Answer:
Answer: How to query 1000 genomes project VCF files for specific regions without downloa
4 months ago by
cmdcolin
★ 3.8k
0
votes
0
replies
13k
views
Answer:
Answer: Which program, tool, or strategy do you use to visualize genomic rearrangements?
5 months ago by
cmdcolin
★ 3.8k
1
vote
1
reply
868
views
Answer:
Answer: Finding human .vcf files online to download
5 months ago by
cmdcolin
★ 3.8k
1
vote
1
reply
592
views
Answer:
Answer: Finding exons that are always included
6 months ago by
cmdcolin
★ 3.8k
1
vote
0
replies
3.3k
views
Answer:
Answer: Visualization of maf alignments in JBrowse
6 months ago by
cmdcolin
★ 3.8k
0
votes
1
reply
575
views
Answer:
Answer: Browser based tool for generating protein alignment figure
6 months ago by
cmdcolin
★ 3.8k
3
votes
1
reply
1.4k
views
Answer:
Answer: What is the best way to compute genetic distances between FASTQ files?
6 months ago by
cmdcolin
★ 3.8k
1
vote
0
replies
785
views
Answer:
Answer: Why is my genome assembly not aligning well?
8 months ago by
cmdcolin
★ 3.8k
0
votes
0
replies
1.6k
views
Answer:
Answer: Can BWA (mem) detect longer deletions?
8 months ago by
cmdcolin
★ 3.8k
1
vote
1
reply
737
views
Answer:
Answer: GRCh37/38 reference genotype AF wrong ?
8 months ago by
cmdcolin
★ 3.8k
2
votes
1
reply
749
views
Answer:
Answer: Recapitulating a GenomeBrowser-style plot
8 months ago by
cmdcolin
★ 3.8k
0
votes
0
replies
1.2k
views
Answer:
Answer: Fasta file is not converting properly to Indexed Fasta File
updated 8 months ago by
GenoMax
142k • written 8 months ago by
cmdcolin
★ 3.8k
0
votes
0
replies
591
views
Answer:
Answer: Combining Multiple Tracks in JBrowse2
8 months ago by
cmdcolin
★ 3.8k
1
vote
0
replies
5.9k
views
Answer:
Answer: Coverage plot of a complete genome
8 months ago by
cmdcolin
★ 3.8k
1
vote
0
replies
10k
views
Answer:
Answer: Alternatives To Liftover
9 months ago by
cmdcolin
★ 3.8k
1
vote
0
replies
693
views
Answer:
Answer: Integration more than one million cell
9 months ago by
cmdcolin
★ 3.8k
1
vote
1
reply
873
views
Answer:
Answer: Factors affecting the size of a structural variant
9 months ago by
cmdcolin
★ 3.8k
1
vote
1
reply
497
views
Answer:
Answer: How to Replicate JBrowse Plot
10 months ago by
cmdcolin
★ 3.8k
1
vote
0
replies
608
views
Answer:
Answer: synteny viewer
11 months ago by
cmdcolin
★ 3.8k
1
vote
1
reply
763
views
Answer:
Answer: How to Split 3000 WGS CRAM files into 1Mbp length chunks
11 months ago by
cmdcolin
★ 3.8k
2
votes
1
reply
921
views
Answer:
Answer: interpreting inversions on IGV
11 months ago by
cmdcolin
★ 3.8k
0
votes
0
replies
892
views
Answer:
Answer: Fast BAM header editing
11 months ago by
cmdcolin
★ 3.8k
0
votes
2
replies
778
views
Answer:
Answer: Haplotype specific alleles
12 months ago by
cmdcolin
★ 3.8k
0
votes
1
reply
798
views
Answer:
Answer: Detecting heterozygous deletions in NGS sequence data
13 months ago by
cmdcolin
★ 3.8k
3
votes
1
reply
2.2k
views
Answer:
Answer: How to perform synteny alignments and plots only with a gene?
13 months ago by
cmdcolin
★ 3.8k
0
votes
1
reply
1.2k
views
Answer:
Answer: How to remove homozygous reference genotypes from multi-sample vcf file based on
14 months ago by
cmdcolin
★ 3.8k
2
votes
0
replies
1.0k
views
Answer:
Answer: How to create a graph that shows pairwise Fst values at single SNP loci across t
14 months ago by
cmdcolin
★ 3.8k
4
votes
1
reply
1.5k
views
Answer:
Answer: Realigning BAM files to new reference
14 months ago by
cmdcolin
★ 3.8k
2
votes
1
reply
2.5k
views
Answer:
Answer: Rust bioinformatics projects ideas
14 months ago by
cmdcolin
★ 3.8k
0
votes
1
reply
840
views
Answer:
Answer: Alternatives to Lollipop for virus variant data
14 months ago by
cmdcolin
★ 3.8k
4
votes
1
reply
1.1k
views
Answer:
Answer: Gviz python alternative
15 months ago by
cmdcolin
★ 3.8k
4
votes
1
reply
2.2k
views
Answer:
Answer: Mapping a small number of contigs to a reference subsequence
15 months ago by
cmdcolin
★ 3.8k
0
votes
1
reply
767
views
Answer:
Answer: Program to View Average Coverage with Variance of BAM/Bigwig Files?
16 months ago by
cmdcolin
★ 3.8k
2
votes
1
reply
875
views
Answer:
Answer: JBrowse on GitHub (A question about file size)
16 months ago by
cmdcolin
★ 3.8k
0
votes
0
replies
4.8k
views
Answer:
Answer: How to create a dotplot like this for GSEA analysis from DNA methylation data (C
16 months ago by
cmdcolin
★ 3.8k
4
votes
2
replies
1.6k
views
Answer:
Answer: How to calculate coverage of Nanopore long read data?
8 weeks ago by
cmdcolin
★ 3.8k
3
votes
1
reply
970
views
Answer:
Answer: remove CIGAR strings starting with insertion
16 months ago by
cmdcolin
★ 3.8k
3
votes
1
reply
781
views
Answer:
Answer: Gene location of both inherited gene
16 months ago by
cmdcolin
★ 3.8k
1
vote
1
reply
1.4k
views
Answer:
Answer: How is p-value calculated in MACS2
17 months ago by
cmdcolin
★ 3.8k
2
votes
1
reply
18k
views
Answer:
Answer: What's Supplementary Reads?
17 months ago by
cmdcolin
★ 3.8k
4
votes
1
reply
92k
views
Answer:
Answer: How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
17 months ago by
cmdcolin
★ 3.8k
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