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Comment: Comment: parallel-fastq-dump install failed
18 months ago by dariober 14k
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1.4k
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Answer: Answer: how to specify a specific conda environment in a specific rule with snakemake?
18 months ago by dariober 14k
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638
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Answer: Answer: Comparing groups with makeContrast in edgeR
18 months ago by dariober 14k
2
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601
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Answer: Answer: How to extract min and max values of a gene from different columns
18 months ago by dariober 14k
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1
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784
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Comment: Comment: Loop for Slurm in python
18 months ago by dariober 14k
2
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908
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Answer: Answer: SnakeMake: MissingRuleException
19 months ago by dariober 14k
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3
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5.7k
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Comment: Comment: How can I learn create a bioinformatic pipeline?
19 months ago by dariober 14k
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2.3k
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Comment: Comment: bash program with two subprograms. How to use getopts in all of them?
19 months ago by dariober 14k
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2.3k
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Comment: Comment: bash program with two subprograms. How to use getopts in all of them?
19 months ago by dariober 14k
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1
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1.0k
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Comment: Comment: Can I perform DE analysis with Seurat if I only have one sample per condition?
19 months ago by dariober 14k
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1
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2.3k
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Comment: Comment: bash program with two subprograms. How to use getopts in all of them?
19 months ago by dariober 14k
1
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893
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Comment: Comment: R Find which gene a SNP position is in
19 months ago by dariober 14k
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1
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2.3k
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Comment: Comment: bash program with two subprograms. How to use getopts in all of them?
19 months ago by dariober 14k
4
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1
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598
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Answer: Answer: How to calculate effect size between two gene sets?
19 months ago by dariober 14k
1
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0
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610
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Comment: Comment: Running several rounds of the same rule in Snakemake
19 months ago by dariober 14k
1
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3
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1.1k
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How ensembl assigns parent GO terms and its consequence on GO analysis
gsea ensembl fgsea biomart go
updated 19 months ago by ▴ 400 • written 19 months ago by 14k
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1.1k
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Comment: Comment: How ensembl assigns parent GO terms and its consequence on GO analysis
19 months ago by dariober 14k
2
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1
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2.0k
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Answer: Answer: Can we use UMAP clustering on bulk data?
19 months ago by dariober 14k
2
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0
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967
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Answer: Answer: Remove NA from file while reading
20 months ago by dariober 14k
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1
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564
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Answer: Answer: CNA calling in mouse tumor-normal WGS
20 months ago by dariober 14k
3
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2
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1.7k
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Answer: Answer: bcftools split-vep -- how to split the INFO column up and also assign the ensemb
20 months ago by dariober 14k
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1
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2.4k
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Comment: Comment: augustus installation with conda
20 months ago by dariober 14k
15
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1
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4.0k
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Tutorial: Dealing with nanopore fast5 files compressed with vbz
hdf5 nanopore fast5 vbz MinKNOW
updated 20 months ago by ★ 1.8k • written 2.4 years ago by 14k
2
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1.8k
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Comment: Comment: r script is not working in snakemake
20 months ago by dariober 14k
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0
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1.2k
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Comment: Comment: Fasta file is not converting properly to Indexed Fasta File
21 months ago by dariober 14k
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1.0k
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Comment: Comment: CWL and Arvados
21 months ago by dariober 14k
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1
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848
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Answer: Answer: Distinguishing records for reads in a pair in a SAM file
21 months ago by dariober 14k
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1
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685
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Comment: Comment: OrthomclLoadBlast: I am not getting the log file or SimilarSequences table.
21 months ago by dariober 14k
2
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2.8k
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Answer: Answer: Write SAM file manually with pysam
22 months ago by dariober 14k
1
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1
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1.7k
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Comment: Comment: How can I biuld to pipeline in nextflow to download SRA files?
22 months ago by dariober 14k
1
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1
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1.7k
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Answer: Answer: How can I biuld to pipeline in nextflow to download SRA files?
22 months ago by dariober 14k
1
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0
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796
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Answer: Answer: Rapid lookup of barcodes
22 months ago by dariober 14k
1
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1
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1.4k
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blast: error while reading seqid using ncbi database
ncbi blast
22 months ago by dariober 14k
1
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0
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1.4k
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Answer: Answer: blast: error while reading seqid using ncbi database
22 months ago by dariober 14k
1
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0
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631
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Comment: Comment: Snakemake MissingExceptionOutput
23 months ago by dariober 14k
1
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1
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5.5k
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Comment: Comment: fgsea after deseq2, criteria for ranking DEGs.
23 months ago by dariober 14k
1
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0
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4.1k
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Answer: Answer: How to parallelise a for loop in bash?
23 months ago by dariober 14k
3
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1
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1.4k
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Comment: Comment: How to make ortholog table
23 months ago by dariober 14k
1
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0
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1.0k
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Comment: Comment: Is there a way to expand RAM or CPU?
24 months ago by dariober 14k
0
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1
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1.9k
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Comment: Comment: snakemake error - one of the commands exited with non-zero exit code
2.0 years ago by dariober 14k
0
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1
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1.9k
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Answer: Answer: snakemake error - one of the commands exited with non-zero exit code
2.0 years ago by dariober 14k
0
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1
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1.4k
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Answer: Answer: Issue with trend line and confidence interval
2.0 years ago by dariober 14k
0
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1
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661
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Comment: Comment: Inference of 5hmC levels from BS-seq and oxBS-seq data
2.0 years ago by dariober 14k
2
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1
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1.6k
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Answer: Answer: snakemake workflow
2.0 years ago by dariober 14k
1
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1
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1.7k
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Comment: Comment: Running bash script from PATH automatically logging into the server
2.0 years ago by dariober 14k
1
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1
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1.7k
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Comment: Comment: Running bash script from PATH automatically logging into the server
2.0 years ago by dariober 14k
2
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1
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1.7k
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Answer: Answer: Running bash script from PATH automatically logging into the server
2.0 years ago by dariober 14k
1
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0
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12k
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Comment: Comment: workflow management system : WDL, CWL, Ruffus, SnakeMake, etc
2.0 years ago by dariober 14k
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0
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21k
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Comment: Comment: Filtration Of Reads With Length Lower Than 30 From Bam
2.1 years ago by dariober 14k
1
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1
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2.1k
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Comment: Comment: fastp snakemake
2.1 years ago by dariober 14k
1,100 results • Page 2 of 22
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