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Comment: Comment: Seurat v5 and how to correctly integrate across multiple experiments
1 day ago by Papyrus ★ 2.9k
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459
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Comment: Comment: DESeq: too low p-value for RNAseq
6 weeks ago by Papyrus ★ 2.9k
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459
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Comment: Comment: DESeq: too low p-value for RNAseq
6 weeks ago by Papyrus ★ 2.9k
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402
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Comment: Comment: representing PCs as marginal distribution on x and Y acis
8 weeks ago by Papyrus ★ 2.9k
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834
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Comment: Comment: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
11 weeks ago by Papyrus ★ 2.9k
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2
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834
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Comment: Comment: How to interpret the output from a DESeq2 WALD test analysis in R to compare gen
11 weeks ago by Papyrus ★ 2.9k
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1
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633
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Comment: Comment: 4 Fastq files for a single run generated by 10X
5 months ago by Papyrus ★ 2.9k
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387
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Comment: Comment: Fisher exact test on different gene sets
6 months ago by Papyrus ★ 2.9k
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1.3k
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Comment: Comment: Gene Set Comparison Without Expression Data
9 months ago by Papyrus ★ 2.9k
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1.3k
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Comment: Comment: Gene Set Comparison Without Expression Data
9 months ago by Papyrus ★ 2.9k
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1.3k
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Comment: Comment: Gene Set Comparison Without Expression Data
9 months ago by Papyrus ★ 2.9k
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523
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Comment: Comment: minfi::getQC - is default badsamplecutoff of 10.5 always appropriate? ~half of s
9 months ago by Papyrus ★ 2.9k
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540
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Comment: Comment: Are there pipelines to analyze the Quality Controls for ATAC-seq and ChIP-seq da
10 months ago by Papyrus ★ 2.9k
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1
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1.3k
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Comment: Comment: Gene Set Comparison Without Expression Data
10 months ago by Papyrus ★ 2.9k
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3.0k
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Comment: Comment: Tools for bulk RNA-seq celltype deconvolution
10 months ago by Papyrus ★ 2.9k
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1.3k
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Comment: Comment: Gene Set Comparison Without Expression Data
10 months ago by Papyrus ★ 2.9k
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0
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787
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Comment: Comment: Boxplot of contrasts and genes together
11 months ago by Papyrus ★ 2.9k
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1
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904
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Comment: Comment: Blacklist for bacterial genome [ChIPseq]?
11 months ago by Papyrus ★ 2.9k
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0
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506
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Comment: Comment: Choosing the right batch effect control algorithm for bulk RNA-seq data meta-ana
11 months ago by Papyrus ★ 2.9k
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1
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1.2k
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Comment: Comment: Obtain counts for specific genes with ChIP-seq data without peak calling
11 months ago by Papyrus ★ 2.9k
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1
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1.0k
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Comment: Comment: Screen for transcription factors/genes that maybe the cause of a disease/differe
11 months ago by Papyrus ★ 2.9k
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1
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1.0k
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Comment: Comment: Screen for transcription factors/genes that maybe the cause of a disease/differe
11 months ago by Papyrus ★ 2.9k
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0
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366
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Comment: Comment: Suggestion for enrichment analysis for small microarray set.
11 months ago by Papyrus ★ 2.9k
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1
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1.0k
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Comment: Comment: Screen for transcription factors/genes that maybe the cause of a disease/differe
11 months ago by Papyrus ★ 2.9k
1
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1
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1.2k
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Comment: Comment: Obtain counts for specific genes with ChIP-seq data without peak calling
11 months ago by Papyrus ★ 2.9k
1
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1
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509
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Comment: Comment: Filtering content in heatmap to highest values
11 months ago by Papyrus ★ 2.9k
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1
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1.7k
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Comment: Comment: Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
12 months ago by Papyrus ★ 2.9k
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0
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1.1k
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Comment: Comment: Splitting heatmap
12 months ago by Papyrus ★ 2.9k
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1
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1.1k
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Comment: Comment: Splitting heatmap
12 months ago by Papyrus ★ 2.9k
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1
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1.1k
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Comment: Comment: Splitting heatmap
12 months ago by Papyrus ★ 2.9k
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0
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485
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Comment: Comment: pipeline for correlation of RNASeq and Methylation data
13 months ago by Papyrus ★ 2.9k
2
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1
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955
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Comment: Comment: Testing overlap significance of three gene sets using the hypergeometric distrib
13 months ago by Papyrus ★ 2.9k
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499
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Comment: Comment: DMRcaller Min. Reads per Cytosine
15 months ago by Papyrus ★ 2.9k
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0
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397
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Comment: Comment: linking methylation/SNPs to gene expression
15 months ago by Papyrus ★ 2.9k
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1.6k
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Comment: Comment: How does enrichGO function calculated p-value?
15 months ago by Papyrus ★ 2.9k
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1.3k
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Comment: Comment: Design and Contrast Matrix in Limma Analysis
15 months ago by Papyrus ★ 2.9k
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1
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1.3k
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Comment: Comment: Design and Contrast Matrix in Limma Analysis
15 months ago by Papyrus ★ 2.9k
1
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1
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1.7k
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Comment: Comment: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
15 months ago by Papyrus ★ 2.9k
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1
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1.7k
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Comment: Comment: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
15 months ago by Papyrus ★ 2.9k
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0
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1.1k
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Comment: Comment: Analysis of cell ranger ARC output data
16 months ago by Papyrus ★ 2.9k
2
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1
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4.0k
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Comment: Comment: Question on how to filter DESeq2 results correctly and use of the results functi
16 months ago by Papyrus ★ 2.9k
1
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0
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922
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Comment: Comment: Animation of EnhancedVolcano?
18 months ago by Papyrus ★ 2.9k
1
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0
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642
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Comment: Comment: Resource for Enhancers for the gene X in different tissues
18 months ago by Papyrus ★ 2.9k
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1
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642
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Comment: Comment: Resource for Enhancers for the gene X in different tissues
18 months ago by Papyrus ★ 2.9k
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0
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1.2k
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Comment: Comment: Why do Illumina 850k/EPIC arrays ignore CpGs which are "GC" in the forward stran
18 months ago by Papyrus ★ 2.9k
1
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1
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1.2k
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Comment: Comment: Why do Illumina 850k/EPIC arrays ignore CpGs which are "GC" in the forward stran
18 months ago by Papyrus ★ 2.9k
1
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1
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1.2k
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Comment: Comment: Why do Illumina 850k/EPIC arrays ignore CpGs which are "GC" in the forward stran
18 months ago by Papyrus ★ 2.9k
2
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0
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2.2k
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Comment: Comment: Searching for a way to plot Seurat style equivalent dotplot for gene expression
18 months ago by Papyrus ★ 2.9k
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1
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830
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Comment: Comment: Issue with DESeq2 gene outlier detection when having multiple groups
20 months ago by Papyrus ★ 2.9k
2
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1
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499
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Comment: Comment: differential expressed proteins cutoff threshold
21 months ago by Papyrus ★ 2.9k
223 results • Page 1 of 5
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