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Answer: Answer: Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
2 days ago by Papyrus ★ 2.9k
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189
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Answer: Answer: Is therer any suggestions on mapping rate of WGBS data?
10 days ago by Papyrus ★ 2.9k
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402
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Answer: Answer: representing PCs as marginal distribution on x and Y acis
9 weeks ago by Papyrus ★ 2.9k
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2
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485
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Answer: Answer: Tutorial for analyzing WGBS data
9 weeks ago by Papyrus ★ 2.9k
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398
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Answer: Answer: Do people use M-value in WGBS?
4 months ago by Papyrus ★ 2.9k
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642
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Answer: Answer: IDAT or Txt MINFI or LIMMA?
9 months ago by Papyrus ★ 2.9k
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971
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Answer: Answer: QC Illumina EPIC array: Removing SNPs at CpG sites
9 months ago by Papyrus ★ 2.9k
2
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827
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Answer: Answer: count number of GC for a given genomic ranges
9 months ago by Papyrus ★ 2.9k
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798
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Answer: Answer: DMR Analysis for RRBS: what annotation file to I use?
9 months ago by Papyrus ★ 2.9k
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988
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Answer: Answer: How to perfrom a statistical test on a 3-way Venn Diagram
10 months ago by Papyrus ★ 2.9k
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1.3k
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Answer: Answer: Gene Set Comparison Without Expression Data
10 months ago by Papyrus ★ 2.9k
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787
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Answer: Answer: Boxplot of contrasts and genes together
11 months ago by Papyrus ★ 2.9k
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1.2k
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Answer: Answer: Obtain counts for specific genes with ChIP-seq data without peak calling
11 months ago by Papyrus ★ 2.9k
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2
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979
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Answer: Answer: Reorder GO terms using R
11 months ago by Papyrus ★ 2.9k
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1.2k
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Answer: Answer: scRNA-seq: How does cell number in clusters affect the number of DE genes?
12 months ago by Papyrus ★ 2.9k
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1.3k
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Answer: Answer: Design and Contrast Matrix in Limma Analysis
15 months ago by Papyrus ★ 2.9k
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1.7k
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Answer: Answer: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
15 months ago by Papyrus ★ 2.9k
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4.0k
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Answer: Answer: Question on how to filter DESeq2 results correctly and use of the results functi
16 months ago by Papyrus ★ 2.9k
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4.9k
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Answer: Answer: How to create a dotplot like this for GSEA analysis from DNA methylation data (C
16 months ago by Papyrus ★ 2.9k
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1.6k
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Answer: Answer: GSEA with GO and KEGG datasets
18 months ago by Papyrus ★ 2.9k
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710
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Answer: Answer: Why a gene in UCSC has different positions?
21 months ago by Papyrus ★ 2.9k
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559
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Answer: Answer: Reads vs library size for DEA
21 months ago by Papyrus ★ 2.9k
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783
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Answer: Answer: About Per base sequence content: Should I cut the former abnormal 10 bp?
2.2 years ago by Papyrus ★ 2.9k
3
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1.0k
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Answer: Answer: TET2 Binding Motifs BED file
2.2 years ago by Papyrus ★ 2.9k
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1.2k
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Answer: Answer: Usefulness of hypergeometric test in pathway enrichment analysis
2.3 years ago by Papyrus ★ 2.9k
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1.0k
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Answer: Answer: Inconsistency between Microarray and RNA-Seq results (Both were performed in the
2.3 years ago by Papyrus ★ 2.9k
4
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1.5k
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Answer: Answer: what are Differentially Expressed Genes?
2.4 years ago by Papyrus ★ 2.9k
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895
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Answer: Answer: From where to get a comprehensive list of genes with gene start, gene end and ch
2.4 years ago by Papyrus ★ 2.9k
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1.3k
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Answer: Answer: calculate percentage of bases covered by the transcriptome
2.5 years ago by Papyrus ★ 2.9k
4
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1.7k
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Answer: Answer: filtering most variable genes
2.5 years ago by Papyrus ★ 2.9k
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1.5k
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Answer: Answer: RNA-Seq and qPCR
2.5 years ago by Papyrus ★ 2.9k
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1.2k
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Answer: Answer: Noob question: how to combine counts and DESeq data into one CSV?
2.5 years ago by Papyrus ★ 2.9k
2
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1.3k
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Answer: Answer: Heatmap for ChIP-seq data
2.5 years ago by Papyrus ★ 2.9k
3
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2
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2.4k
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Answer: Answer: ChIP-seq heatmap input bed file
2.5 years ago by Papyrus ★ 2.9k
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1.5k
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Answer: Answer: Create custom annotation for Chinese hamster (Cricetulus griseus)
2.6 years ago by Papyrus ★ 2.9k
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2.4k
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Answer: Answer: Problem in plotting graph or Graphics Device in the RStudio
2.6 years ago by Papyrus ★ 2.9k
0
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0
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908
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Answer: Answer: How to do gene enrichment with locally stored KEGG & Reactome data in R
2.6 years ago by Papyrus ★ 2.9k
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1.1k
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Answer: Answer: Why some CpGs start with "ch"
2.6 years ago by Papyrus ★ 2.9k
2
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0
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2.2k
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Answer: Answer: How to understand logics and statistical concepts behind limma package?
2.6 years ago by Papyrus ★ 2.9k
3
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1
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1.8k
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Answer: Answer: How to import a BED file to ChIPseeker in order to visualize genome coverage plo
2.6 years ago by Papyrus ★ 2.9k
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0
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774
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Answer: Answer: Filtering of RNA-seq data
2.6 years ago by Papyrus ★ 2.9k
3
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0
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1.4k
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Answer: Answer: proteomics data analysis and non-normality distribution
2.6 years ago by Papyrus ★ 2.9k
2
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0
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837
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Answer: Answer: how to get the file of CG sites correspond to gene about Infinium MethylationEPI
2.6 years ago by Papyrus ★ 2.9k
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1.3k
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Answer: Answer: Pick Random regions inside genes
2.6 years ago by Papyrus ★ 2.9k
2
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0
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874
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Answer: Answer: Per base sequence Quality in Fast QC report
2.6 years ago by Papyrus ★ 2.9k
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1.7k
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Answer: Answer: Database for Enhancers with Coordinates
2.7 years ago by Papyrus ★ 2.9k
2
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1
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754
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Answer: Answer: Batch Correction While Batch Numbers and Labels Match
2.7 years ago by Papyrus ★ 2.9k
1
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0
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4.1k
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Answer: Answer: Changing colour labels of samples with pheatmap
2.7 years ago by Papyrus ★ 2.9k
1
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2
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1.8k
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Answer: Answer: how to combine either Rna-seq datasets or results from analysis of Rna-seq datas
2.7 years ago by Papyrus ★ 2.9k
3
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0
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952
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Answer: Answer: adjusting for confounding factors in Spearman correlation?
2.7 years ago by Papyrus ★ 2.9k
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