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Answer: Answer: cloupe to 10x format
6 weeks ago by fracarb8 ★ 1.6k
2
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1
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480
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Answer: Answer: change order of violin plots in ggplot2
updated 8 weeks ago by 43k • written 8 weeks ago by ★ 1.6k
1
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1
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787
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Answer: Answer: Subsetting Seurat object based on list of cell barcodes
8 weeks ago by fracarb8 ★ 1.6k
0
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0
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549
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Answer: Answer: ArchR Doublet Inference to Signac
8 weeks ago by fracarb8 ★ 1.6k
3
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0
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292
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Answer: Answer: Doplot to display 2 metadata variables
9 weeks ago by fracarb8 ★ 1.6k
0
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0
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338
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Answer: Answer: Error in changing the annotation color of pheatmap
9 weeks ago by fracarb8 ★ 1.6k
0
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0
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652
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Answer: Answer: Downsampling of cells in scRNAseq DE analysis
11 weeks ago by fracarb8 ★ 1.6k
1
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0
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311
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Answer: Answer: getting error when transfer labels for my scRNAseq data using FindTransferAnchor
11 weeks ago by fracarb8 ★ 1.6k
0
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0
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358
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Answer: Answer: Speed up FindClusters execution?
11 weeks ago by fracarb8 ★ 1.6k
1
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1
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1.9k
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Answer: Answer: JoinLayers to find markers in merged or integrated analysis in seurat
3 months ago by fracarb8 ★ 1.6k
0
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0
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652
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Answer: Answer: Monocle3 gene expression dot plot with a cell data set object (need help with re
4 months ago by fracarb8 ★ 1.6k
2
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1
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454
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Answer: Answer: convert dataframe R
5 months ago by fracarb8 ★ 1.6k
0
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0
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1.9k
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Answer: Answer: DoubletFinder for Python?
5 months ago by fracarb8 ★ 1.6k
2
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0
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933
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Answer: Answer: How to 'organize' multiple umap/genes generates with Seurat `FeaturePlot`in a sp
6 months ago by fracarb8 ★ 1.6k
1
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0
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434
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Answer: Answer: seurat-creating heatmaps
7 months ago by fracarb8 ★ 1.6k
2
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1
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1.3k
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Answer: Answer: Bioinformatics software for single cell omics
7 months ago by fracarb8 ★ 1.6k
0
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1
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2.7k
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Answer: Answer: Code for reading h5ad files in R
7 months ago by fracarb8 ★ 1.6k
1
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0
replies
625
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Answer: Answer: How to get ncol = nrow?
updated 7 months ago by 43k • written 7 months ago by ★ 1.6k
1
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0
replies
1.4k
views
Answer: Answer: Is there an easy to modify the subplot titles in DimPlot (Seurat)?
updated 8 months ago by 43k • written 8 months ago by ★ 1.6k
2
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0
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788
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Answer: Answer: Add samples IDs to Seurat object when integrating different samples to do differ
updated 8 months ago by 43k • written 8 months ago by ★ 1.6k
1
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0
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1.6k
views
Answer: Answer: How do I install DSSP?
8 months ago by fracarb8 ★ 1.6k
2
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2
replies
1.3k
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Answer: Answer: Selecting MOUSE gene set libraries in Enrichr
8 months ago by fracarb8 ★ 1.6k
1
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0
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700
views
Answer: Answer: UMAP graph using DimPlot pre/post integration
8 months ago by fracarb8 ★ 1.6k
0
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1
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1.6k
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Answer: Answer: Negative Expression in RNA Assay on Dot Plot After SCT Transform
8 months ago by fracarb8 ★ 1.6k
0
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0
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2.6k
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Answer: Answer: InferCNV results interpretation
8 months ago by fracarb8 ★ 1.6k
1
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0
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1.0k
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Answer: Answer: Can I using scVI to integrate data, then using R to conduct following analysis?
8 months ago by fracarb8 ★ 1.6k
1
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0
replies
1.6k
views
Answer: Answer: Change transparency/alpha in seurat's vlnPlot()
9 months ago by fracarb8 ★ 1.6k
1
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0
replies
568
views
Answer: Answer: HeatMap, R, Rownames
10 months ago by fracarb8 ★ 1.6k
0
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1
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846
views
Answer: Answer: How to obtain cell-cell interaction list
10 months ago by fracarb8 ★ 1.6k
5
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1
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2.5k
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Answer: Answer: In Scanpy, how to RDS file and merge it with other Scanpy objects.
10 months ago by fracarb8 ★ 1.6k
7
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0
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5.7k
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Answer: Answer: Convert Human to Mouse Symbols
10 months ago by fracarb8 ★ 1.6k
0
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0
replies
797
views
Answer: Answer: Uploading 10x Data into R for Monocle 3
11 months ago by fracarb8 ★ 1.6k
0
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0
replies
695
views
Answer: Answer: What kind of statistical test does Cellranger count use?
11 months ago by fracarb8 ★ 1.6k
2
votes
0
replies
4.1k
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Answer: Answer: Seurat 'DoHeatmap()' hierarchical clustering
11 months ago by fracarb8 ★ 1.6k
0
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1
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21k
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Answer: Answer: How to get subset of a Seurat object based on metadata?
13 months ago by fracarb8 ★ 1.6k
0
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1
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1.2k
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Answer: Answer: Getting unspliced counts for scRNA-seq data generated from cellranger aggr pipel
14 months ago by fracarb8 ★ 1.6k
0
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1
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2.2k
views
Answer: Answer: How to solve a possible memory issues with Seurat and IntegrateData step?
15 months ago by fracarb8 ★ 1.6k
0
votes
1
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675
views
Answer: Answer: exchange the monocle data with Seurat
15 months ago by fracarb8 ★ 1.6k
2
votes
1
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873
views
Answer: Answer: bash script error to copy files from multiple directories to one directory
17 months ago by fracarb8 ★ 1.6k
1
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0
replies
572
views
Answer: Answer: Extract Monocle2 "State" for Seurat
18 months ago by fracarb8 ★ 1.6k
0
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1
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1.7k
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Answer: Answer: Tuning seurat integration strength to prevent overcorrection
20 months ago by fracarb8 ★ 1.6k
0
votes
0
replies
751
views
Answer: Answer: What is the best way to process a metadata file that SEURAT can read?
20 months ago by fracarb8 ★ 1.6k
1
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1
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3.2k
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Answer: Answer: SCTransform and differential gene expression
21 months ago by fracarb8 ★ 1.6k
0
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0
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971
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Answer: Answer: Clustered, annotated dotplot to scRNA-Seq data
23 months ago by fracarb8 ★ 1.6k
1
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1
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2.0k
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Answer: Answer: ESTIMATE tumor purity
23 months ago by fracarb8 ★ 1.6k
1
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1
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2.9k
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Answer: Answer: What to do with Seurat metadata and counts in separate text files?
23 months ago by fracarb8 ★ 1.6k
0
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1
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1.1k
views
Answer: Answer: How to add Ensembl id to cluster.markers in Seurat
23 months ago by fracarb8 ★ 1.6k
2
votes
0
replies
1.1k
views
Answer: Answer: Error on R shiny app metaOmics; object %AND% not found
23 months ago by fracarb8 ★ 1.6k
0
votes
0
replies
1.7k
views
Answer: Answer: Automatic rename of filenames with bash script
24 months ago by fracarb8 ★ 1.6k
1
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1
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2.0k
views
Answer: Answer: Normalization of RNASeq counts with a reference gene (/genes)
2.0 years ago by fracarb8 ★ 1.6k
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