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Comment: Comment: Is there any tutorial page that tells you how to extract read count from illumin
2.0 years ago by Simon Ahn ▴ 10
2
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2
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707
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Is there any tutorial page that tells you how to extract read count from illumina single-cell RNAseq fastq file?
illumina scRNA-seq
2.0 years ago by Simon Ahn ▴ 10
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576
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Comment: Comment: Is there any way to make p-value high if correlation has negative value?
2.4 years ago by Simon Ahn ▴ 10
2
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2
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576
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Is there any way to make p-value high if correlation has negative value?
correlation p-value
2.4 years ago by Simon Ahn ▴ 10
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0
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408
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What does it mean by "fitted to a normal distribution and a threshold of p < 0.001"?
normal statstic distribution
2.5 years ago by Simon Ahn ▴ 10
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995
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Comment: Comment: How to get DEGs compare one sample to another?
2.5 years ago by Simon Ahn ▴ 10
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4
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995
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How to get DEGs compare one sample to another?
DESeq2 DEG
updated 2.5 years ago by ▴ 790 • written 2.5 years ago by ▴ 10
1
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0
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932
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Questions on Seurat AddModuleScore function
AddModuleScore Seurat single-cell
2.5 years ago by Simon Ahn ▴ 10
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396
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How should I normalize read count without any metadata or reading depth?
single-cell normalization
2.5 years ago by Simon Ahn ▴ 10
3
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2
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933
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How should I deal with my RNAseq result with high % of mutiple aligned reads?
RNAseq raw-count fastq
updated 2.6 years ago by 8.7k • written 2.6 years ago by ▴ 10
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1.4k
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Comment: Comment: How to deal with high % of reads mapped to multiple loci on STAR?
2.6 years ago by Simon Ahn ▴ 10
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1.4k
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How to deal with high % of reads mapped to multiple loci on STAR?
RNAseq fastq raw-count
2.6 years ago by Simon Ahn ▴ 10
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0
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849
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Comment: Comment: Using dgelist function in EdgeR to calculate RPKM
2.6 years ago by Simon Ahn ▴ 10
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961
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Comment: Comment: Running DEseq2 on galaxy having error for invalid row.names length
2.6 years ago by Simon Ahn ▴ 10
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1.3k
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Comment: Comment: Low assigned alignments
2.6 years ago by Simon Ahn ▴ 10
4
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2
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946
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How should I align my single-end fastq file?
RNAseq raw-count fastq
updated 2.6 years ago by ▴ 80 • written 2.6 years ago by ▴ 10
1
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5
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1.3k
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Low assigned alignments
fastq-alignment RNAseq raw-count
2.6 years ago by Simon Ahn ▴ 10
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1
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1.3k
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Comment: Comment: Low assigned alignments
2.6 years ago by Simon Ahn ▴ 10
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0
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1.2k
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Comment: Comment: Paired-end reads somehow counted twice?
2.6 years ago by Simon Ahn ▴ 10
3
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3
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1.2k
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Paired-end reads somehow counted twice?
RNAseq raw-count fastq
updated 2.6 years ago by 142k • written 2.6 years ago by ▴ 10
2
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2
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966
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bowtie2 and then HISAT2? What does it mean in Data processing details on a paper?
RNAseq fastq raw-count
updated 2.6 years ago by ▴ 410 • written 2.6 years ago by ▴ 10
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1.3k
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Comment: Comment: I'm not sure my Bulk RNAseq read counts extracted from fastq file are correct
2.6 years ago by Simon Ahn ▴ 10
6
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5
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1.3k
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I'm not sure my Bulk RNAseq read counts extracted from fastq file are correct
fastq RNAseq raw-count
updated 2.6 years ago by 21k • written 2.6 years ago by ▴ 10
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485
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How can I be sure that raw read counts are well processed from fastq files?
fastq RNAseq raw-count
2.6 years ago by Simon Ahn ▴ 10
2
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1
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946
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Making a Group Tree using RNA-seq Read Count in R
R RNA-Seq
updated 11 months ago by 44k • written 5.1 years ago by ▴ 10
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