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questions
0
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replies
474
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Is it relevant to calculate alpha and beta diversity indices from MAGs-abundances matrix ?
metagenomics
statistics
shotgun
biostatistics
16 months ago by
vin.darb
▴ 300
1
vote
1
reply
3.3k
views
Perform two-way ANOSIM in R
metabarcoding
statistics
metagenomic
R
updated 3.7 years ago by
annaA
▴ 10 • written 4.4 years ago by
vin.darb
▴ 300
2
votes
8
replies
3.0k
views
Some problems with DEXSEQ analyse
RNA-Seq
isoform
expression
DEXSEQ
updated 4.4 years ago by
Kristoffer Vitting-Seerup
★ 4.0k • written 5.2 years ago by
vin.darb
▴ 300
4
votes
2
replies
2.3k
views
How to build a transcriptome reference ?
RNA-Seq
salmon
4.9 years ago by
vin.darb
▴ 300
9
votes
8
replies
1.6k
views
How to do a benchmark analysis of RNA-Seq tools ?
transcription
splicing
RNA-Seq
updated 10 months ago by
Ram
43k • written 4.9 years ago by
vin.darb
▴ 300
7
votes
11
replies
4.1k
views
[rMATS] Number of AS Events from one sample
splicing
RNA-Seq
NGS
updated 5.1 years ago by
Kristoffer Vitting-Seerup
★ 4.0k • written 5.1 years ago by
vin.darb
▴ 300
0
votes
0
replies
1.4k
views
How to analyse a list of DEG (differentially expressed genes) and DASG (differentially alternatively splices genes)
RNA-Seq
deg
ngs
analysis
5.1 years ago by
vin.darb
▴ 300
5
votes
3
replies
4.9k
views
How to parallelize a rule in Snakemake ?
snakemake
pipeline
RNA-Seq
NGS
5.2 years ago by
vin.darb
▴ 300
8
votes
5
replies
3.8k
views
Scripting a NGS analysis pipeline, in Shell or Python ?
RNA-Seq
Bash
Python
Analysis
NGS
5.3 years ago by
vin.darb
▴ 300
2
votes
1
reply
1.6k
views
How to integrate GSEA (genes) and MSEA (metabolites) analysis ?
gene
metabolites
analysis
RNA-Seq
updated 5.4 years ago by
Smandape
▴ 120 • written 5.5 years ago by
vin.darb
▴ 300
0
votes
1
reply
1.6k
views
Question about Differential Gene Expression Analysis with GEO2R
GEO2R
Gene
Differential
Expression
Analysis
5.4 years ago by
vin.darb
▴ 300
0
votes
4
replies
2.9k
views
How to do gene functional annotation ?
genome
sequencing
gene
Annotation
updated 5.7 years ago by
WouterDeCoster
47k • written 5.9 years ago by
vin.darb
▴ 300
0
votes
3
replies
1.2k
views
How to have the abundance of my bacterium of interest in a metagenomic dataset
gene
genome
next-gen
updated 5.8 years ago by
Tm
★ 1.1k • written 5.8 years ago by
vin.darb
▴ 300
0
votes
5
replies
973
views
How to improve single-cells data ?
genome
sequence
Assembly
next-gen
5.9 years ago by
vin.darb
▴ 300
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